fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G23230.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028118 not found in 141aa AT3G23230.1 1st_1st 0.608490566 Ia
Pt041522 not found in 148aa AT3G23230.1 1st_1st 0.617924528 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G23230.1     MESSNRSSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAY
gm028118_Glyma1 MEEHQKGK---LQGKEEVRFRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAY
pt041522_POPTR_ MEEPHKGKGNEEKGRGEVRYRGVRRRPWGKFAAEIRDPSRQGGRLWLGTFDTAEEAARAY
                **. ::..    :.  :.*:**********:********::*.*******:*********

AT3G23230.1     DRAAFNLRGHLAILNFPNEYYPRMDDYSLRPPYASSSSSSSSGSTS----TNVSRQNQRE
gm028118_Glyma1 DRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLATPSSSSHASE-----STSSAAQQRH
pt041522_POPTR_ DKAAFNLRRHLAILNFPSEYISQVTEFSPRPRSFSASSSNVGASESFERGSSSSTGQGKQ
                *:****** ********.** .::   .  *   ::.**.  .*      :. *  : :.

AT3G23230.1     VFEFEYLDDKVLEELLD-SEERKR-----
gm028118_Glyma1 VFEIPCLDDKVLEDLLGLSEEHKKKKKGD
pt041522_POPTR_ VIEFEYLDDKILEELLE-TEEEKKKRRQD
                *:*:  ****:**:**  :**.*:
BoxShade v3.31 C (beta, 970507) Output
AT3G23230.1     M E S S N R S S N N Q S Q D D K Q A R F R G V R R R P W G K F A A E I R D P S R N G A R L W L G T F E T A E E A A R A Y
gm028118_Glyma1    M E E H Q K G K - - - L Q G K E E V R F R G V R R R P W G K Y A A E I R D P S K Q G S R L W L G T F D T A E E A A R A Y
pt041522_POPTR_    M E E P H K G K G N E E K G R G E V R Y R G V R R R P W G K F A A E I R D P S R Q G G R L W L G T F D T A E E A A R A Y
 
AT3G23230.1     D R A A F N L R G H L A I L N F P N E Y Y P R M D D Y S L R P P Y A S S S S S S S S G S T S - - - - T N V S R Q N Q R E
gm028118_Glyma1    D R A A F N L R G H L A I L N F P S E Y Y S Q I R G S P P Y P P H L A T P S S S S H A S E - - - - - S T S S A A Q Q R H
pt041522_POPTR_    D K A A F N L R R H L A I L N F P S E Y I S Q V T E F S P R P R S F S A S S S N V G A S E S F E R G S S S S T G Q G K Q
 
AT3G23230.1     V F E F E Y L D D K V L E E L L D - S E E R K R - - - - -
gm028118_Glyma1    V F E I P C L D D K V L E D L L G L S E E H K K K K K G D
pt041522_POPTR_    V I E F E Y L D D K I L E E L L E - T E E E K K K R R Q D
 
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