fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G24050.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027485 not found in 245aa AT3G24050.1 1st_1st 0.372750642 Ib
Pt010179 not found in 258aa AT3G24050.1 1st_1st 0.424164524 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G24050.1     MEMESF-------MDDLLNFSVPEEEEDDDEH-----TQPPRNITRRKTGLRPTDSFGLF
gm027485_Glyma1 --METIGS-----VDDLLDFSSDIGEEDDYDD------KPRKACPSLNSKCAGPSLFNPL
pt010179_POPTR_ --MESLDTAAGFMVDDLLDFCSDIGEGDDDEEHQNNNKKPRKGLPSLNPNALASASFNVL
                  **::       :****:*.    * ** :.      :* :  .  :.    .  *. :

AT3G24050.1     -----NTDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSP
gm027485_Glyma1 VQVDPNHS-FSEFAEEELEWLSNKDAFPSVETFVDLSSIQ----------PGTT-KNQKS
pt010179_POPTR_ -----EHTLLPEFAEEELEWLSNKDAFPAVETCFGILSEE----------PGSIPKHHSP
                     :   :  . **:***:***:*** :** ..: . :           .:  *: ..

AT3G24050.1     VSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRR---RT
gm027485_Glyma1 APVLECSTGSSN--SNNSTNSI-------------SLLNSCDHLKVPVRARSKSRSRHRP
pt010179_POPTR_ VSVLENSTTSSTSISGNSSNSS-------------IIMSYCS-LRVPVKARSKRRHR-RP
                ..*** *: **.  :.**:..               ::. *  ::.*.:**** *   *.

AT3G24050.1     GRRDLR---VLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTL
gm027485_Glyma1 GLAENSSQQVWWRQPSNGTSKADEGMKISS----IGRKCQHCGAEKTPQWRAGPSGPKTL
pt010179_POPTR_ --REIREQERWWSREN--STRRKPAVSVAK----MGRKCQHCGVEKTPQWRAGPDGPKTL
                   :       *   .    : .  :.::     :********.********** *****

AT3G24050.1     CNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQSGDGDGDRK--DCG
gm027485_Glyma1 CNACGVRFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRRQKQMGMG----------
pt010179_POPTR_ CNACGVRYKSGRLVPEYRPANSPTFSSKLHSNSHRKVVEMRKQKQM-MGSLVVKPMDKG
                *******:************.**** :.********:****:* *   *
BoxShade v3.31 C (beta, 970507) Output
AT3G24050.1     M E M E S F - - - - - - - M D D L L N F S V P E E E E D D D E H - - - - - T Q P P R N I T R R K T G L R P T D S F G L F
gm027485_Glyma1    - - M E T I G S - - - - - V D D L L D F S S D I G E E D D Y D D - - - - - - K P R K A C P S L N S K C A G P S L F N P L
pt010179_POPTR_    - - M E S L D T A A G F M V D D L L D F C S D I G E G D D D E E H Q N N N K K P R K G L P S L N P N A L A S A S F N V L
 
AT3G24050.1     - - - - - N T D D L G V V E E E D L E W I S N K N A F P V I E T F V G V L P S E H F P I T S L L E R E A T E V K Q L S P
gm027485_Glyma1    V Q V D P N H S - F S E F A E E E L E W L S N K D A F P S V E T F V D L S S I Q - - - - - - - - - - P G T T - K N Q K S
pt010179_POPTR_    - - - - - E H T L L P E F A E E E L E W L S N K D A F P A V E T C F G I L S E E - - - - - - - - - - P G S I P K H H S P
 
AT3G24050.1     V S V L E T S S H S S T T T T S N S S G G S N G S T A V A T T T T T P T I M S C C V G F K A P A K A R S K R R - - - R T
gm027485_Glyma1    A P V L E C S T G S S N - - S N N S T N S I - - - - - - - - - - - - - S L L N S C D H L K V P V R A R S K S R S R H R P
pt010179_POPTR_    V S V L E N S T T S S T S I S G N S S N S S - - - - - - - - - - - - - I I M S Y C S - L R V P V K A R S K R R H R - R P
 
AT3G24050.1     G R R D L R - - - V L W T G N E Q G G I Q K K K T M T V A A A A L I M G R K C Q H C G A E K T P Q W R A G P A G P K T L
gm027485_Glyma1    G L A E N S S Q Q V W W R Q P S N G T S K A D E G M K I S S - - - - I G R K C Q H C G A E K T P Q W R A G P S G P K T L
pt010179_POPTR_    - - R E I R E Q E R W W S R E N - - S T R R K P A V S V A K - - - - M G R K C Q H C G V E K T P Q W R A G P D G P K T L
 
AT3G24050.1     C N A C G V R Y K S G R L V P E Y R P A N S P T F T A E L H S N S H R K I V E M R K Q Y Q S G D G D G D R K - - D C G
gm027485_Glyma1    C N A C G V R F K S G R L V P E Y R P A S S P T F H S D L H S N S H R K I V E M R R Q K Q M G M G - - - - - - - - - -
pt010179_POPTR_    C N A C G V R Y K S G R L V P E Y R P A N S P T F S S K L H S N S H R K V V E M R K Q K Q M - M G S L V V K P M D K G
 
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