fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G24050.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt010179 not found in 258aa AT3G24050.1 1st_1st 0.424164524 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G24050.1     MEMES------FM-DDLLNFSVPEEEEDDDEHTQPPRNITRRKTG---LRP----TDSFG
pt010179_POPTR_ --MESLDTAAGFMVDDLLDFCSDIGEGDDDEEHQ--NNNKKPRKGLPSLNPNALASASFN
                  ***      ** ****:*.    * ****. *  .* .: :.*   *.*    : **.

AT3G24050.1     LFNTDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSV
pt010179_POPTR_ VLEHTLLPEFAEEELEWLSNKDAFPAVETCFGILSEEPGSIP----------KHHSPVSV
                :::   *  . **:***:***:***.:** .*:*..*  .*.          *: *****

AT3G24050.1     LETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLR
pt010179_POPTR_ LENSTTSSTSISGNSSNSS-------------IIMSYC-SLRVPVKARSKRRHRRPREIR
                **.*: ***: :.***..*              *** * .::.*.*******:   *::*

AT3G24050.1     V---LWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGV
pt010179_POPTR_ EQERWWS--RENSTRRKPAVSVAK----MGRKCQHCGVEKTPQWRAGPDGPKTLCNACGV
                     *:  .:.. ::* :::**     *********.********** ***********

AT3G24050.1     RYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ-SGDGDGDRKDCG
pt010179_POPTR_ RYKSGRLVPEYRPANSPTFSSKLHSNSHRKVVEMRKQKQMMGSLVVKPMDKG
                *******************:::********:****** *  *.   .  * *
BoxShade v3.31 C (beta, 970507) Output
AT3G24050.1     M E M E S - - - - - - F M - D D L L N F S V P E E E E D D D E H T Q P P R N I T R R K T G - - - L R P - - - - T D S F G
pt010179_POPTR_    - - M E S L D T A A G F M V D D L L D F C S D I G E G D D D E E H Q - - N N N K K P R K G L P S L N P N A L A S A S F N
 
AT3G24050.1     L F N T D D L G V V E E E D L E W I S N K N A F P V I E T F V G V L P S E H F P I T S L L E R E A T E V K Q L S P V S V
pt010179_POPTR_    V L E H T L L P E F A E E E L E W L S N K D A F P A V E T C F G I L S E E P G S I P - - - - - - - - - - K H H S P V S V
 
AT3G24050.1     L E T S S H S S T T T T S N S S G G S N G S T A V A T T T T T P T I M S C C V G F K A P A K A R S K R R R T G R R D L R
pt010179_POPTR_    L E N S T T S S T S I S G N S S N S S - - - - - - - - - - - - - I I M S Y C - S L R V P V K A R S K R R H R R P R E I R
 
AT3G24050.1     V - - - L W T G N E Q G G I Q K K K T M T V A A A A L I M G R K C Q H C G A E K T P Q W R A G P A G P K T L C N A C G V
pt010179_POPTR_    E Q E R W W S - - R E N S T R R K P A V S V A K - - - - M G R K C Q H C G V E K T P Q W R A G P D G P K T L C N A C G V
 
AT3G24050.1     R Y K S G R L V P E Y R P A N S P T F T A E L H S N S H R K I V E M R K Q Y Q - S G D G D G D R K D C G
pt010179_POPTR_    R Y K S G R L V P E Y R P A N S P T F S S K L H S N S H R K V V E M R K Q K Q M M G S L V V K P M D K G
 
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