fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G24050.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027485 not found in 245aa AT3G24050.1 1st_1st 0.372750642 Ib
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G24050.1     MEMESFMDDLLNFS--VPEEEEDDDEHTQPPRNITRRKTG---------LRPTDSFGLFN
gm027485_Glyma1 METIGSVDDLLDFSSDIGEEDDYDDKPRKACPSLNSKCAGPSLFNPLVQVDPNHSFSEF-
                **  . :****:**  : **:: **:  :.  .:. : :*         : *..**. * 

AT3G24050.1     TDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLET
gm027485_Glyma1 -------AEEELEWLSNKDAFPSVETFVDL---------SSIQPGTTKNQKSAP--VLEC
                        **:***:***:*** :****.:         * ::  :*: :: :*  *** 

AT3G24050.1     SSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDL----
gm027485_Glyma1 STGSSNSNNS---------------TNSISLLNSCDHLKVPVRARSKSRSRHRPGLAENS
                *: **.:..*               *.: :::..*  :*.*.:**** *   * .*    

AT3G24050.1     --RVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGV
gm027485_Glyma1 SQQVWWRQPSNGTSKADEGMKISS----IGRKCQHCGAEKTPQWRAGPSGPKTLCNACGV
                  :* *   .:*  : .: *.:::    :*******************:***********

AT3G24050.1     RYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQSGDGDGDRKDCG
gm027485_Glyma1 RFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRRQKQMGMG--------
                *:************.**** ::*************:* * * *
BoxShade v3.31 C (beta, 970507) Output
AT3G24050.1     M E M E S F M D D L L N F S - - V P E E E E D D D E H T Q P P R N I T R R K T G - - - - - - - - - L R P T D S F G L F N
gm027485_Glyma1    M E T I G S V D D L L D F S S D I G E E D D Y D D K P R K A C P S L N S K C A G P S L F N P L V Q V D P N H S F S E F -
 
AT3G24050.1     T D D L G V V E E E D L E W I S N K N A F P V I E T F V G V L P S E H F P I T S L L E R E A T E V K Q L S P V S V L E T
gm027485_Glyma1    - - - - - - - A E E E L E W L S N K D A F P S V E T F V D L - - - - - - - - - S S I Q P G T T K N Q K S A P - - V L E C
 
AT3G24050.1     S S H S S T T T T S N S S G G S N G S T A V A T T T T T P T I M S C C V G F K A P A K A R S K R R R T G R R D L - - - -
gm027485_Glyma1    S T G S S N S N N S - - - - - - - - - - - - - - - T N S I S L L N S C D H L K V P V R A R S K S R S R H R P G L A E N S
 
AT3G24050.1     - - R V L W T G N E Q G G I Q K K K T M T V A A A A L I M G R K C Q H C G A E K T P Q W R A G P A G P K T L C N A C G V
gm027485_Glyma1    S Q Q V W W R Q P S N G T S K A D E G M K I S S - - - - I G R K C Q H C G A E K T P Q W R A G P S G P K T L C N A C G V
 
AT3G24050.1     R Y K S G R L V P E Y R P A N S P T F T A E L H S N S H R K I V E M R K Q Y Q S G D G D G D R K D C G
gm027485_Glyma1    R F K S G R L V P E Y R P A S S P T F H S D L H S N S H R K I V E M R R Q K Q M G M G - - - - - - - -
 
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