fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G24520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt008500 not found in 339aa AT3G24520.1 1st_1st 0.5 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G24520.1     -MEDDNSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPA
pt008500_POPTR_ MME-----ANNNNNIVAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPV
                 **      *****::***::* ****.**:** **:** *:*****:***********.

AT3G24520.1     YFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHAR--------
pt008500_POPTR_ YFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHSSNNKGSSYM
                ******************************** ******:**:**.****:         

AT3G24520.1     --GMYGQDLEDGEIVREIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDP
pt008500_POPTR_ QVNIKGEDFDDEDIIMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDP
                  .: *:*::* :*: ** ***:**: ** *:: **:*:****:**:*****:*******

AT3G24520.1     DLLPRMMLEKERTKQQQQVSDKKKRRVTMSTVKSE------------EEEVEEDEGR---
pt008500_POPTR_ DLLPRMILEKERTR---QIKDKKQRLMISSSATSPSGMAISSTSTIIKSEVVHEEGSIGV
                ******:******:   *:.***:* :  *:..*             :.** .:**    

AT3G24520.1     ------VFRV--MSSSTPSPSSTENLYRNHSPDGWI------------VPMTQGQFGSYE
pt008500_POPTR_ ISSPETVFNVDKFCQSSPSPDESDI-----NAIGWLDQVNYGLAVAGPSPFTTGSMGAGI
                      **.*  :..*:***..::      .. **:             *:* *.:*:  

AT3G24520.1     TGLVAKSMLSNSTSSTSSSLTSTFSLPESVNGGGGGGCGSIQ--GERRYKETATFGGVVE
pt008500_POPTR_ GATVAVLPQGNST----------------VIGYGGDWGDHINYFGE--------MAAGVE
                 . **    .***                * * **.  . *:  **        :.. **

AT3G24520.1     SNPPTTPPYPFSLFRGGF
pt008500_POPTR_ DRP--RPSYPFSLLGGGF
                ..*   *.*****: ***
BoxShade v3.31 C (beta, 970507) Output
AT3G24520.1     - M E D D N S N N N N N N N V I A P F I V K T Y Q M V N D P S T D W L I T W G P A H N S F I V V D P L D F S Q R I L P A
pt008500_POPTR_    M M E - - - - - A N N N N N I V A P F V L K I Y Q M V S D P T T D S L I S W G R A N N S F I V I D P L D F S Q R I L P V
 
AT3G24520.1     Y F K H N N F S S F V R Q L N T Y G F R K V D P D R W E F A N E H F L R G Q K H L L N N I A R R K H A R - - - - - - - -
pt008500_POPTR_    Y F K H N N F S S F V R Q L N T Y G F R K V D P D R W E F A N E W F L R G Q K Q L L K N I V R R K H S S N N K G S S Y M
 
AT3G24520.1     - - G M Y G Q D L E D G E I V R E I E R L K E E Q R E L E A E I Q R M N R R I E A T E K R P E Q M M A F L Y K V V E D P
pt008500_POPTR_    Q V N I K G E D F D D E D I I M E I A R L K Q E Q K A L E Q E L E G M N K R L E A T E R R P Q Q M M A F I Y K V V E D P
 
AT3G24520.1     D L L P R M M L E K E R T K Q Q Q Q V S D K K K R R V T M S T V K S E - - - - - - - - - - - - E E E V E E D E G R - - -
pt008500_POPTR_    D L L P R M I L E K E R T R - - - Q I K D K K Q R L M I S S S A T S P S G M A I S S T S T I I K S E V V H E E G S I G V
 
AT3G24520.1     - - - - - - V F R V - - M S S S T P S P S S T E N L Y R N H S P D G W I - - - - - - - - - - - - V P M T Q G Q F G S Y E
pt008500_POPTR_    I S S P E T V F N V D K F C Q S S P S P D E S D I - - - - - N A I G W L D Q V N Y G L A V A G P S P F T T G S M G A G I
 
AT3G24520.1     T G L V A K S M L S N S T S S T S S S L T S T F S L P E S V N G G G G G G C G S I Q - - G E R R Y K E T A T F G G V V E
pt008500_POPTR_    G A T V A V L P Q G N S T - - - - - - - - - - - - - - - - V I G Y G G D W G D H I N Y F G E - - - - - - - - M A A G V E
 
AT3G24520.1     S N P P T T P P Y P F S L F R G G F
pt008500_POPTR_    D R P - - R P S Y P F S L L G G G F
 
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