fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G27010.1 HNQMPGLELGLSQEGN at 250/314 in AT3G27010.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051626 SQQMPGLELGLSQDGH in 269/330 AT3G27010.1 1st_1st 0.476284584 Ia
Pt031931 TQQLPGLELGLSQDGH in 269/320 AT3G27010.1 1st_1st 0.492094861 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G27010.1     MDPKNLNRHQ----VPNFLN--------PPPPPRNQGLVDDDAASAVVSDEN-------R
gm051626_Glyma1 MDPKGSKQQQPQEVVPKFLSL---------PQHHYQ--------QQGNSNNN---NMGEN
pt031931_POPTR_ MDPKGSNSKNPHE-LPTFLTHTHPSPPHPPPQPHLQQ------PQQLHSQNQQQPNMGDN
                ****. : ::    :*.**.          *  : *        .   *:::       .

AT3G27010.1     KPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAAR
gm051626_Glyma1 KP-SEVKDFQIVV-AAEKDESKK---QQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAAR
pt031931_POPTR_ KP-AEIKDFQIVV--ADKEEQKK-----QLAPKRSSNKDRHTKVEGRGRRIRMPALCAAR
                ** :*:*******  ::*: .**     **.*****************************

AT3G27010.1     IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAG
gm051626_Glyma1 IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALA-AAGNSLSPQGSSLSSA
pt031931_POPTR_ IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALA-AAGGAISQQGASLSAG
                *********************************:********* :*. :   **.**::.

AT3G27010.1     LMISH----DLDGGSSSSGRPLNWG-IGGGEGVSR-SSLPTGLWPN-VAGFG--------
gm051626_Glyma1 LHHQHQKIDELGCGSGGSSRA-SWQMVGGNLGRPHLGVATTGLWPPHVSGFGFQTATTTT
pt031931_POPTR_ L---HQKIDDLGGSS--SSRA-SWAMLGGNLGRPH-HVTTAGLWPP-VGGYGFQSSSNST
                *   *    :*. .*  *.*. .*  :**. * .:    .:****  *.*:*        

AT3G27010.1     ----SGVPTTGLMSEG-----AGY--RIGFPGFDFP----GVGHMSFASILGG-NHNQMP
gm051626_Glyma1 TTTSSGPSNATLATES-----SNYLQKIAFPGFDLPTSATNMGHMSFTSILGGAGSQQMP
pt031931_POPTR_ -----GPSTTNIGTEAAAAGGSSYLQKLGFPGFDLP--GNNMGPMSFTSILGG-GTQQLP
                     * ..: : :*.     :.*  ::.*****:*    .:* ***:***** . :*:*

AT3G27010.1     GLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQ-GRVLHHMHHNHEEHQ-QESGEKDD
gm051626_Glyma1 GLELGLSQDGHIGVLNPQALNQIYQQMNH---QAQAGRV--HQQHQHQQQQHQQTPAKDD
pt031931_POPTR_ GLELGLSQDGHIGVLSPQALNQIYQQMGH-------ARV--HQQ-QHQQQN----PSKDD
                ********:*::***.**::.******.:       .**  * : :*::::      ***

AT3G27010.1     SQGSGR-
gm051626_Glyma1 SQGSGGQ
pt031931_POPTR_ SQGSGQ-
                *****
BoxShade v3.31 C (beta, 970507) Output
AT3G27010.1     M D P K N L N R H Q - - - - V P N F L N - - - - - - - - P P P P P R N Q G L V D D D A A S A V V S D E N - - - - - - - R
gm051626_Glyma1    M D P K G S K Q Q Q P Q E V V P K F L S L - - - - - - - - - P Q H H Y Q - - - - - - - - Q Q G N S N N N - - - N M G E N
pt031931_POPTR_    M D P K G S N S K N P H E - L P T F L T H T H P S P P H P P P Q P H L Q Q - - - - - - P Q Q L H S Q N Q Q Q P N M G D N
 
AT3G27010.1     K P T T E I K D F Q I V V S A S D K E P N K K S Q N Q N Q L G P K R S S N K D R H T K V E G R G R R I R M P A L C A A R
gm051626_Glyma1    K P - S E V K D F Q I V V - A A E K D E S K K - - - Q Q Q L A P K R S S N K D R H T K V E G R G R R I R M P A L C A A R
pt031931_POPTR_    K P - A E I K D F Q I V V - - A D K E E Q K K - - - - - Q L A P K R S S N K D R H T K V E G R G R R I R M P A L C A A R
 
AT3G27010.1     I F Q L T R E L G H K S D G E T I Q W L L Q Q A E P S I I A A T G S G T I P A S A L A S S A A T S N H H Q G G S L T A G
gm051626_Glyma1    I F Q L T R E L G H K S D G E T I Q W L L Q Q A E P S I I A A T G T G T I P A S A L A - A A G N S L S P Q G S S L S S A
pt031931_POPTR_    I F Q L T R E L G H K S D G E T I Q W L L Q Q A E P S I I A A T G T G T I P A S A L A - A A G G A I S Q Q G A S L S A G
 
AT3G27010.1     L M I S H - - - - D L D G G S S S S G R P L N W G - I G G G E G V S R - S S L P T G L W P N - V A G F G - - - - - - - -
gm051626_Glyma1    L H H Q H Q K I D E L G C G S G G S S R A - S W Q M V G G N L G R P H L G V A T T G L W P P H V S G F G F Q T A T T T T
pt031931_POPTR_    L - - - H Q K I D D L G G S S - - S S R A - S W A M L G G N L G R P H - H V T T A G L W P P - V G G Y G F Q S S S N S T
 
AT3G27010.1     - - - - S G V P T T G L M S E G - - - - - A G Y - - R I G F P G F D F P - - - - G V G H M S F A S I L G G - N H N Q M P
gm051626_Glyma1    T T T S S G P S N A T L A T E S - - - - - S N Y L Q K I A F P G F D L P T S A T N M G H M S F T S I L G G A G S Q Q M P
pt031931_POPTR_    - - - - - G P S T T N I G T E A A A A G G S S Y L Q K L G F P G F D L P - - G N N M G P M S F T S I L G G - G T Q Q L P
 
AT3G27010.1     G L E L G L S Q E G N V G V L N P Q S F T Q I Y Q Q M G Q A Q A Q A Q - G R V L H H M H H N H E E H Q - Q E S G E K D D
gm051626_Glyma1    G L E L G L S Q D G H I G V L N P Q A L N Q I Y Q Q M N H - - - Q A Q A G R V - - H Q Q H Q H Q Q Q Q H Q Q T P A K D D
pt031931_POPTR_    G L E L G L S Q D G H I G V L S P Q A L N Q I Y Q Q M G H - - - - - - - A R V - - H Q Q - Q H Q Q Q N - - - - P S K D D
 
AT3G27010.1     S Q G S G R -
gm051626_Glyma1    S Q G S G G Q
pt031931_POPTR_    S Q G S G Q -
 
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