fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G27010.1 HNQMPGLELGLSQEGN at 250/314 in AT3G27010.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003590 SQQLPGLELGLSQDGH in 272/321 AT3G27010.1 not_1st 0.490118577 II
Pt010021 NQQLPGLELGLSQDGH in 246/302 AT3G27010.1 not_1st 0.422924901 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G27010.1     MDPKNLNRH---QVPNFL--------------NPPPPPRNQGLVDDDAASAVVSDENR--
pt010021_POPTR_ MEPKSPNQYQP-QMPSFL--------------NPPQEASMS--------ENNINSNN---
pt003590_POPTR_ MDPKGSNSKNPHELPTFFTLTHTHTSPSPSPHTPPQPHHQQ--------PQHLHNQNQLQ
                *:**. *     ::*.*:              .**     .           : .:*   

AT3G27010.1     -----KPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPA
pt010021_POPTR_ -----NKPADIEDFQNMM--ADKDDSKK-----KLAPKRSSNKDRHKKVEGRGRRIRIPA
pt003590_POPTR_ PNMGENKAAEIKDFQIVV--ADKEEQKK-----QLAPKRSSNKDRHTKVEGRGRRIRMPA
                     : .::*:*** ::  :**: .**     :*.**********.**********:**

AT3G27010.1     LCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGG
pt010021_POPTR_ LCAARIFQLTRELEHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVS-EQGG
pt003590_POPTR_ LCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAIS-QQGA
                ************* ************************:*********::..: . .**.

AT3G27010.1     SLTAGLMISHDLDG-GSSSSGRPLNWGIGGGE-GVSRSSLPTGLWPNVAGFG-------S
pt010021_POPTR_ SVSTGLHAKMEGLGPGVTGSRDRNDWTLSNTKLGISNVAT--GVWPSVGGIGLGFVPN-S
pt003590_POPTR_ SLSAGLHQKIDDIG---ESSSRRTSWAMLGGNLGRPHQVTSAGLWPPVGGYGFQSSSNTT
                *:::**  . :  *    .*    .* : . : * ..     *:** *.* *       :

AT3G27010.1     GVPTTGLMSEGAG-----YRIGFPGFDFPG--VGHMSFASILGGNHNQMPGLELGLSQEG
pt010021_POPTR_ GQSTSNF---GNENSSTLPKYGFQGVEFPNINMGLMSFYSMFSGTNQQLPGLELGLSQDG
pt003590_POPTR_ GPSTTNIVSEGGGGSSYLQKNGFSGFDMPGNNIGPMSLTSILGVGSQQLPGLELGLSQDG
                * .*:.:   *        : ** *.::*.  :* **: *::.   :*:*********:*

AT3G27010.1     NVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGSGR
pt010021_POPTR_ HSAMLNPQALSPFYHQMVQGRG-----VLDSL--NQEKQQEQPPDKDDSQGSRQ
pt003590_POPTR_ HIGVLSPQALSQIYQQMGQAR--------------VQQHQQQNPSKDDSQGSGQ
                : .:*.**::: :*:** *.:               :::*::  .******* :
BoxShade v3.31 C (beta, 970507) Output
AT3G27010.1     M D P K N L N R H - - - Q V P N F L - - - - - - - - - - - - - - N P P P P P R N Q G L V D D D A A S A V V S D E N R - -
pt010021_POPTR_    M E P K S P N Q Y Q P - Q M P S F L - - - - - - - - - - - - - - N P P Q E A S M S - - - - - - - - E N N I N S N N - - -
pt003590_POPTR_    M D P K G S N S K N P H E L P T F F T L T H T H T S P S P S P H T P P Q P H H Q Q - - - - - - - - P Q H L H N Q N Q L Q
 
AT3G27010.1     - - - - - K P T T E I K D F Q I V V S A S D K E P N K K S Q N Q N Q L G P K R S S N K D R H T K V E G R G R R I R M P A
pt010021_POPTR_    - - - - - N K P A D I E D F Q N M M - - A D K D D S K K - - - - - K L A P K R S S N K D R H K K V E G R G R R I R I P A
pt003590_POPTR_    P N M G E N K A A E I K D F Q I V V - - A D K E E Q K K - - - - - Q L A P K R S S N K D R H T K V E G R G R R I R M P A
 
AT3G27010.1     L C A A R I F Q L T R E L G H K S D G E T I Q W L L Q Q A E P S I I A A T G S G T I P A S A L A S S A A T S N H H Q G G
pt010021_POPTR_    L C A A R I F Q L T R E L E H K S D G E T I Q W L L Q Q A E P S I I A A T G T G T I P A S A L A A A G A S V S - E Q G G
pt003590_POPTR_    L C A A R I F Q L T R E L G H K S D G E T I Q W L L Q Q A E P S I I A A T G T G T I P A S A L A A A G G A I S - Q Q G A
 
AT3G27010.1     S L T A G L M I S H D L D G - G S S S S G R P L N W G I G G G E - G V S R S S L P T G L W P N V A G F G - - - - - - - S
pt010021_POPTR_    S V S T G L H A K M E G L G P G V T G S R D R N D W T L S N T K L G I S N V A T - - G V W P S V G G I G L G F V P N - S
pt003590_POPTR_    S L S A G L H Q K I D D I G - - - E S S S R R T S W A M L G G N L G R P H Q V T S A G L W P P V G G Y G F Q S S S N T T
 
AT3G27010.1     G V P T T G L M S E G A G - - - - - Y R I G F P G F D F P G - - V G H M S F A S I L G G N H N Q M P G L E L G L S Q E G
pt010021_POPTR_    G Q S T S N F - - - G N E N S S T L P K Y G F Q G V E F P N I N M G L M S F Y S M F S G T N Q Q L P G L E L G L S Q D G
pt003590_POPTR_    G P S T T N I V S E G G G G S S Y L Q K N G F S G F D M P G N N I G P M S L T S I L G V G S Q Q L P G L E L G L S Q D G
 
AT3G27010.1     N V G V L N P Q S F T Q I Y Q Q M G Q A Q A Q A Q G R V L H H M H H N H E E H Q Q E S G E K D D S Q G S G R
pt010021_POPTR_    H S A M L N P Q A L S P F Y H Q M V Q G R G - - - - - V L D S L - - N Q E K Q Q E Q P P D K D D S Q G S R Q
pt003590_POPTR_    H I G V L S P Q A L S Q I Y Q Q M G Q A R - - - - - - - - - - - - - - V Q Q H Q Q Q N P S K D D S Q G S G Q
 
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