fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G27010.1 HNQMPGLELGLSQEGN at 250/314 in AT3G27010.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051626 SQQMPGLELGLSQDGH in 269/330 AT3G27010.1 1st_1st 0.476284584 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G27010.1     MDPKNLNRHQ----VPNFLNPPPPP-RNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVS
gm051626_Glyma1 MDPKGSKQQQPQEVVPKFLSLPQHHYQQQGNSNNNNMG-----EN-KP-SEVKDFQIVVA
                ****. :::*    **:**. *    ::**  :::  .     ** ** :*:*******:

AT3G27010.1     ASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDG
gm051626_Glyma1 AEKDE----SKKQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDG
                *...*    *::*:**.*******************************************

AT3G27010.1     ETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISH----DLDGG
gm051626_Glyma1 ETIQWLLQQAEPSIIAATGTGTIPASALA-AAGNSLSPQGSSLSSALHHQHQKIDELGCG
                *******************:********* :*..*   **.**::.*  .*    :*. *

AT3G27010.1     SSSSGRPLNWGIGGGEGVSRSSL---PTGLW-PNVAGFG------------SGVPTTGLM
gm051626_Glyma1 SGGSSRA-SWQMVGGN-LGRPHLGVATTGLWPPHVSGFGFQTATTTTTTTSSGPSNATLA
                *..*.*. .* : **: :.*. *   .**** *:*:***            ** ..: * 

AT3G27010.1     SEGAGY--RIGFPGFDFP----GVGHMSFASILGG-NHNQMPGLELGLSQEGNVGVLNPQ
gm051626_Glyma1 TESSNYLQKIAFPGFDLPTSATNMGHMSFTSILGGAGSQQMPGLELGLSQDGHIGVLNPQ
                :*.:.*  :*.*****:*    .:*****:***** . :***********:*::******

AT3G27010.1     SFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQ-QESGEKDDSQGSGR-
gm051626_Glyma1 ALNQIYQQMNH-QAQA-GRV--HQQHQHQQQQHQQTPAKDDSQGSGGQ
                ::.******.: **** ***  * :*:*:::* *::  ********
BoxShade v3.31 C (beta, 970507) Output
AT3G27010.1     M D P K N L N R H Q - - - - V P N F L N P P P P P - R N Q G L V D D D A A S A V V S D E N R K P T T E I K D F Q I V V S
gm051626_Glyma1    M D P K G S K Q Q Q P Q E V V P K F L S L P Q H H Y Q Q Q G N S N N N N M G - - - - - E N - K P - S E V K D F Q I V V A
 
AT3G27010.1     A S D K E P N K K S Q N Q N Q L G P K R S S N K D R H T K V E G R G R R I R M P A L C A A R I F Q L T R E L G H K S D G
gm051626_Glyma1    A E K D E - - - - S K K Q Q Q L A P K R S S N K D R H T K V E G R G R R I R M P A L C A A R I F Q L T R E L G H K S D G
 
AT3G27010.1     E T I Q W L L Q Q A E P S I I A A T G S G T I P A S A L A S S A A T S N H H Q G G S L T A G L M I S H - - - - D L D G G
gm051626_Glyma1    E T I Q W L L Q Q A E P S I I A A T G T G T I P A S A L A - A A G N S L S P Q G S S L S S A L H H Q H Q K I D E L G C G
 
AT3G27010.1     S S S S G R P L N W G I G G G E G V S R S S L - - - P T G L W - P N V A G F G - - - - - - - - - - - - S G V P T T G L M
gm051626_Glyma1    S G G S S R A - S W Q M V G G N - L G R P H L G V A T T G L W P P H V S G F G F Q T A T T T T T T T S S G P S N A T L A
 
AT3G27010.1     S E G A G Y - - R I G F P G F D F P - - - - G V G H M S F A S I L G G - N H N Q M P G L E L G L S Q E G N V G V L N P Q
gm051626_Glyma1    T E S S N Y L Q K I A F P G F D L P T S A T N M G H M S F T S I L G G A G S Q Q M P G L E L G L S Q D G H I G V L N P Q
 
AT3G27010.1     S F T Q I Y Q Q M G Q A Q A Q A Q G R V L H H M H H N H E E H Q - Q E S G E K D D S Q G S G R -
gm051626_Glyma1    A L N Q I Y Q Q M N H - Q A Q A - G R V - - H Q Q H Q H Q Q Q Q H Q Q T P A K D D S Q G S G G Q
 
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