fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G27650.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050795 not found in 131aa AT3G27650.1 1st_1st 0.613559322 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G27650.1     MPKRETKKIKPSQEVIKEGPFLVAIHLKGIYMSNYTNSPCAACKFLRRKCTSDCVFAPYF
gm050795_Glyma1 -----------------------------MASSSYSNSPCAACKFLRRKCMPDCIFAPYF
                                             :  *.*:************** .**:*****

AT3G27650.1     PPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISV
gm050795_Glyma1 PPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISV
                ***** ******:*********:*:** ******************:*************

AT3G27650.1     LQRQVLRLQRELEETNADLMRYAGC-----LGGETTSAYGGRRG--
gm050795_Glyma1 LQKQVLRLQKELDATNADLIRYSACNEMPNLGGRS------RIGDI
                **:******:**: *****:**:.*     ***.:      * *
BoxShade v3.31 C (beta, 970507) Output
AT3G27650.1     M P K R E T K K I K P S Q E V I K E G P F L V A I H L K G I Y M S N Y T N S P C A A C K F L R R K C T S D C V F A P Y F
gm050795_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M A S S S Y S N S P C A A C K F L R R K C M P D C I F A P Y F
 
AT3G27650.1     P P E E P T K F A N V H R I F G A S N V S K I L H E V A P H Q R E D A V N S L A Y E A E A R L K D P V Y G C V G A I S V
gm050795_Glyma1    P P E E P H K F A N V H K I F G A S N V S K L L N E V Q P H Q R E D A V N S L A Y E A E A R I K D P V Y G C V G A I S V
 
AT3G27650.1     L Q R Q V L R L Q R E L E E T N A D L M R Y A G C - - - - - L G G E T T S A Y G G R R G - -
gm050795_Glyma1    L Q K Q V L R L Q K E L D A T N A D L I R Y S A C N E M P N L G G R S - - - - - - R I G D I
 
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