fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G30530.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt019238 not found in 196aa AT3G30530.1 not_1st 0.46875 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G30530.1     MQPQTDVFSLHNYL---NSSILQSPYPSNFPI----STPFPTNGQNPYLLYGFQSPTNNP
pt019238_POPTR_ MQPN-EIAGLH-YLVPPNS----SPYSAHFSMTQDNSQMFQFN-QFTNQSYNFQIP---P
                ***: :: .** **   **    ***.::*.:    *  *  * * .   *.** *   *

AT3G30530.1     QSMSLS------SNNSTSDEAEEQQTNNNIINERKQRRMISNRESARRSRMRKQRHLDEL
pt019238_POPTR_ QLQEFSLQASCMSSHSTSDEADEQQL--SLINERKQRRMISNRESARRSRMRKQKHLDEL
                *  .:*      *.:******:***   .:************************:*****

AT3G30530.1     WSQVMWLRIENHQLLDKLNNLSESHDKVLQENAQLKEETFELKQVISDMQIQSPFSCFR-
pt019238_POPTR_ WSQVVWLRNENHQLVDKVNHVSECHDQVVQENNQLKEEISELRQVLTDMQLSSPYPSLKG
                ****:*** *****:**:*::**.**:*:*** *****  **:**::***:.**:..:: 

AT3G30530.1     -DDI------IPIE--------------
pt019238_POPTR_ LEDITCDTAYLRAESSNQSITSSSDLLG
                 :**      :  *
BoxShade v3.31 C (beta, 970507) Output
AT3G30530.1     M Q P Q T D V F S L H N Y L - - - N S S I L Q S P Y P S N F P I - - - - S T P F P T N G Q N P Y L L Y G F Q S P T N N P
pt019238_POPTR_    M Q P N - E I A G L H - Y L V P P N S - - - - S P Y S A H F S M T Q D N S Q M F Q F N - Q F T N Q S Y N F Q I P - - - P
 
AT3G30530.1     Q S M S L S - - - - - - S N N S T S D E A E E Q Q T N N N I I N E R K Q R R M I S N R E S A R R S R M R K Q R H L D E L
pt019238_POPTR_    Q L Q E F S L Q A S C M S S H S T S D E A D E Q Q L - - S L I N E R K Q R R M I S N R E S A R R S R M R K Q K H L D E L
 
AT3G30530.1     W S Q V M W L R I E N H Q L L D K L N N L S E S H D K V L Q E N A Q L K E E T F E L K Q V I S D M Q I Q S P F S C F R -
pt019238_POPTR_    W S Q V V W L R N E N H Q L V D K V N H V S E C H D Q V V Q E N N Q L K E E I S E L R Q V L T D M Q L S S P Y P S L K G
 
AT3G30530.1     - D D I - - - - - - I P I E - - - - - - - - - - - - - -
pt019238_POPTR_    L E D I T C D T A Y L R A E S S N Q S I T S S S D L L G
 
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