fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G47710.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt023817 not found in 91aa AT1G74500.1 not_not 0.693641618 III
Pt004762 not found in 90aa AT5G39860.1 not_not 0.595375722 III
Pt019267 not found in 90aa AT5G39860.1 not_not 0.578034682 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G47710.1     MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL
pt023817_POPTR_ MSSRRSRSRQSSSSRISDDQILDLVTKLQQLLPEI-RNRRSDKVSAAKILQETCNYIKSL
pt004762_POPTR_ MSSR--RPRQSSVPRITDDQIIDLVSKLRQLLPEI-SQRRSDKVSASKVLQETCNYIRNL
pt019267_POPTR_ MSSR--RSRQSSVPRITDDQIIHLVSKLRQLLPEI-RQRRSDKVSASKVLQETCNYIKNL
                ****  *.**:. . *:*:** .** :*::****:  :***.****:::*****.**:.*

AT3G47710.1     SKEVDDLSERLSQLLES--TDSAQAALIRSLLMQ
pt023817_POPTR_ HREVGDLSERLSELLET--TDTAQAAIIRNLLMQ
pt004762_POPTR_ HREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
pt019267_POPTR_ HREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
                 :**.*******:** :  :*:.:* :**.*:*
BoxShade v3.31 C (beta, 970507) Output
AT3G47710.1     M S S R K S R S R Q T G A S M I T D E Q I N D L V L Q L H R L L P E L A N N R R S G K V S A S R V L Q E T C S Y I R N L
pt023817_POPTR_    M S S R R S R S R Q S S S S R I S D D Q I L D L V T K L Q Q L L P E I - R N R R S D K V S A A K I L Q E T C N Y I K S L
pt004762_POPTR_    M S S R - - R P R Q S S V P R I T D D Q I I D L V S K L R Q L L P E I - S Q R R S D K V S A S K V L Q E T C N Y I R N L
pt019267_POPTR_    M S S R - - R S R Q S S V P R I T D D Q I I H L V S K L R Q L L P E I - R Q R R S D K V S A S K V L Q E T C N Y I K N L
 
AT3G47710.1     S K E V D D L S E R L S Q L L E S - - T D S A Q A A L I R S L L M Q
pt023817_POPTR_    H R E V G D L S E R L S E L L E T - - T D T A Q A A I I R N L L M Q
pt004762_POPTR_    H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
pt019267_POPTR_    H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
 
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