fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G47710.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb022206 not found in 213aa AT1G26945.1 1st_not 0.624277456 II
Sb002496 not found in 86aa AT3G28857.1 not_not 0.468208092 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G47710.1     ----------------------------------------MSS-RKSRSRQTGASMITDE
Sb002496_Sorbi1 ----------------------------------------MSSGRRGR--------ISDD
Sb022206_Sorbi1 LPFHHLCISNLLASLLTSQFVSRSLAKLLSPISQTTTSTKMSS-RRSRSRQSGSSRITEE
                                                        *** *:.*        *:::

AT3G47710.1     QINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD
Sb002496_Sorbi1 EINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSLHREVDDLSERLSGLMSTMD
Sb022206_Sorbi1 QISDLVSKLQDLLPE-ARLQSNARVPSARVLQETCNYIRSLHQEVDDLSERLSELLATSD
                :*.:*: :*: **** :. :  .: .::::*:*** **:.* :********** *: : *

AT3G47710.1     --SAQAALIRSLLMQ
Sb002496_Sorbi1 NDSPQAEIIRSLLR-
Sb022206_Sorbi1 MSSAQAAVIRSLLM-
                  *.** :*****
BoxShade v3.31 C (beta, 970507) Output
AT3G47710.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S - R K S R S R Q T G A S M I T D E
Sb002496_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S G R R G R - - - - - - - - I S D D
Sb022206_Sorbi1    L P F H H L C I S N L L A S L L T S Q F V S R S L A K L L S P I S Q T T T S T K M S S - R R S R S R Q S G S S R I T E E
 
AT3G47710.1     Q I N D L V L Q L H R L L P E L A N N R R S G K V S A S R V L Q E T C S Y I R N L S K E V D D L S E R L S Q L L E S T D
Sb002496_Sorbi1    E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L H R E V D D L S E R L S G L M S T M D
Sb022206_Sorbi1    Q I S D L V S K L Q D L L P E - A R L Q S N A R V P S A R V L Q E T C N Y I R S L H Q E V D D L S E R L S E L L A T S D
 
AT3G47710.1     - - S A Q A A L I R S L L M Q
Sb002496_Sorbi1    N D S P Q A E I I R S L L R -
Sb022206_Sorbi1    M S S A Q A A V I R S L L M -
 
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