fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G48920.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054830 not found in 270aa AT3G48920.1 1st_1st 0.386915887 Ib
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G48920.1     MVFKSEKSNREMKSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCR
gm054830_Glyma2 MGYQPLE-----KGKPKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCR
                * ::. :     *.* *::*********:***.*:**:******::*::***********

AT3G48920.1     LRWVNYLRPGLKKSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSNLKK
gm054830_Glyma2 LRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSRISQHLPGRTDNEIKNYWHSYLKK
                ***:********:. *:****  :*:** *******:**:.*************** ***

AT3G48920.1     GVTLKQHETTKKHQTPLITNSLEALQSSTE----RSSSSINVGETSNAQTSSFSPNLVFS
gm054830_Glyma2 RVA-KAKEMESHNQIKYASSSSDTMDSSHSLQNLATQCPLNYNFTKEASQSSL-PKLLFA
                 *: * :*  .::*    :.* ::::** .     :...:* . *.:*. **: *:*:*:

AT3G48920.1     EW--LDH--------SL-LMDQSPQKSSYVQNLV--LPEERGFIGPCGPRY---LGNDSL
gm054830_Glyma2 EWLSLDHLNSANSVDSLGLRNGFDQNSSFHEAAIHDMSEV-----PFGGEYNRCVSNISA
                **  ***        ** * :   *:**: :  :  :.*      * * .*   :.* * 

AT3G48920.1     PDFVPNSEFLLDDEISSE--------IEFCTSFS---DNFLFDGLINELRPM
gm054830_Glyma2 PEMF-NSQLKYGNQMVENGYIHCMPGVDLSSNFSISNDAIMYI---------
                *::. **::  .::: .:        :::.:.**   * :::
BoxShade v3.31 C (beta, 970507) Output
AT3G48920.1     M V F K S E K S N R E M K S K E K Q R K G L W S P E E D E K L R S H V L K Y G H G C W S T I P L Q A G L Q R N G K S C R
gm054830_Glyma2    M G Y Q P L E - - - - - K G K P K H K K G L W S P E E D N K L R N H I L K H G H G C W S S V P I K A G L Q R N G K S C R
 
AT3G48920.1     L R W V N Y L R P G L K K S L F T K Q E E T I L L S L H S M L G N K W S Q I S K F L P G R T D N E I K N Y W H S N L K K
gm054830_Glyma2    L R W I N Y L R P G L K R G K F S K Q E E E T I L T L H H M L G N K W S R I S Q H L P G R T D N E I K N Y W H S Y L K K
 
AT3G48920.1     G V T L K Q H E T T K K H Q T P L I T N S L E A L Q S S T E - - - - R S S S S I N V G E T S N A Q T S S F S P N L V F S
gm054830_Glyma2    R V A - K A K E M E S H N Q I K Y A S S S S D T M D S S H S L Q N L A T Q C P L N Y N F T K E A S Q S S L - P K L L F A
 
AT3G48920.1     E W - - L D H - - - - - - - - S L - L M D Q S P Q K S S Y V Q N L V - - L P E E R G F I G P C G P R Y - - - L G N D S L
gm054830_Glyma2    E W L S L D H L N S A N S V D S L G L R N G F D Q N S S F H E A A I H D M S E V - - - - - P F G G E Y N R C V S N I S A
 
AT3G48920.1     P D F V P N S E F L L D D E I S S E - - - - - - - - I E F C T S F S - - - D N F L F D G L I N E L R P M
gm054830_Glyma2    P E M F - N S Q L K Y G N Q M V E N G Y I H C M P G V D L S S N F S I S N D A I M Y I - - - - - - - - -
 
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