fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G49930.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039438 not found in 233aa AT1G27730.1 1st_not 0.444444444 II
Pt017464 not found in 238aa AT1G27730.1 1st_not 0.474747474 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G49930.1     MALDTLNSPTSTTTTTAPPPFLRCLDETEPENLESWTKRKRTKRHRIDQPNPPPSEEEYL
pt017464_POPTR_ MALEALNSP-----TTAPPSF-QFEDLSLPCAGEPWVKRKRSKRPRLDH---QPTEEEYL
gm039438_Glyma1 MALETLNSP-----TTTAPSF-PFDDPTI-----PWAKRKRSKRCSRDH----PSEEEYL
                ***::****     **:.*.*    * :      .*.****:**   *:    *:*****

AT3G49930.1     ALCLLMLARGSSDHH-SPPSDHHSLSPLS-----DHQKDYKCSVCGKSFPSYQALGGHKT
pt017464_POPTR_ ALCLVMLARGH----------QKSLTPSTVFTSSELKNSYKCSVCNKEFPSYQALGGHKA
gm039438_Glyma1 ALCLIMLARGGTTRRVSTPPPQPTPDPST-------KLSYKCSVCNKSFPSYQALGGHKA
                ****:*****           : :  * :       : .******.*.***********:

AT3G49930.1     SHRKPVSVDVNNSNG--TVTNNGNISNGLVGQSGKTHNCSICFKSFPSGQALGGHKRCHY
pt017464_POPTR_ SHRKLAG-GGEDQTTSSTTTSAITATKTVSNGSGKTHECSICHKTFPTGQALGGHKRCHY
gm039438_Glyma1 SHRKLAASGGEDQPT--TTSSAASSANTAS--GGRTHECSICHKSFPTGQALGGHKRCHY
                **** .. . ::.    *.:.  . ::     .*:**:****.*:**:************

AT3G49930.1     DG-GNGNSNGDNSH--------------------KFDLNLPADQVSDETIGKSQLSGE-E
pt017464_POPTR_ EGIIGG---GEKSGVTSTSESAGSTNTRTHSHN-EFDLNIPALPEFSSCFS---VSGEDE
gm039438_Glyma1 EGNSNGNNNNSNSSVTAASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKV------GEDE
                :*  .*   ..:*                     .****:**    .  .      ** *

AT3G49930.1     TKSVL--------------------
pt017464_POPTR_ VMSPLPAAKKLRISMPPRFEVSQAQ
gm039438_Glyma1 VESPHPVMKKPRPFVIPKIEIPQYQ
                . *
BoxShade v3.31 C (beta, 970507) Output
AT3G49930.1     M A L D T L N S P T S T T T T T A P P P F L R C L D E T E P E N L E S W T K R K R T K R H R I D Q P N P P P S E E E Y L
pt017464_POPTR_    M A L E A L N S P - - - - - T T A P P S F - Q F E D L S L P C A G E P W V K R K R S K R P R L D H - - - Q P T E E E Y L
gm039438_Glyma1    M A L E T L N S P - - - - - T T T A P S F - P F D D P T I - - - - - P W A K R K R S K R C S R D H - - - - P S E E E Y L
 
AT3G49930.1     A L C L L M L A R G S S D H H - S P P S D H H S L S P L S - - - - - D H Q K D Y K C S V C G K S F P S Y Q A L G G H K T
pt017464_POPTR_    A L C L V M L A R G H - - - - - - - - - - Q K S L T P S T V F T S S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A
gm039438_Glyma1    A L C L I M L A R G G T T R R V S T P P P Q P T P D P S T - - - - - - - K L S Y K C S V C N K S F P S Y Q A L G G H K A
 
AT3G49930.1     S H R K P V S V D V N N S N G - - T V T N N G N I S N G L V G Q S G K T H N C S I C F K S F P S G Q A L G G H K R C H Y
pt017464_POPTR_    S H R K L A G - G G E D Q T T S S T T T S A I T A T K T V S N G S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y
gm039438_Glyma1    S H R K L A A S G G E D Q P T - - T T S S A A S S A N T A S - - G G R T H E C S I C H K S F P T G Q A L G G H K R C H Y
 
AT3G49930.1     D G - G N G N S N G D N S H - - - - - - - - - - - - - - - - - - - - K F D L N L P A D Q V S D E T I G K S Q L S G E - E
pt017464_POPTR_    E G I I G G - - - G E K S G V T S T S E S A G S T N T R T H S H N - E F D L N I P A L P E F S S C F S - - - V S G E D E
gm039438_Glyma1    E G N S N G N N N N S N S S V T A A S E G V G S T H T V S H G H H R D F D L N I P A F P D F S T K V - - - - - - G E D E
 
AT3G49930.1     T K S V L - - - - - - - - - - - - - - - - - - - -
pt017464_POPTR_    V M S P L P A A K K L R I S M P P R F E V S Q A Q
gm039438_Glyma1    V E S P H P V M K K P R P F V I P K I E I P Q Y Q
 
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