fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G49930.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt017464 not found in 238aa AT1G27730.1 1st_not 0.474747474 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G49930.1     MALDTLNSPTSTTTTTAPPPFLRCLDETEPENLESWTKRKRTKRHRIDQPNPPPSEEEYL
pt017464_POPTR_ MALEALNSP-----TTAPPSF-QFEDLSLPCAGEPWVKRKRSKRPRLDH---QPTEEEYL
                ***::****     *****.* :  * : *   *.*.****:** *:*:    *:*****

AT3G49930.1     ALCLLMLARGSSDHHSPPSDHHSLSPLSDHQKDYKCSVCGKSFPSYQALGGHKTSHRKPV
pt017464_POPTR_ ALCLVMLARGHQKSLTPSTVFTS----SELKNSYKCSVCNKEFPSYQALGGHKASHRKLA
                ****:***** ..  :*.: . *    *: ::.******.*.***********:**** .

AT3G49930.1     --SVDVNNSNGT---VTNNGNISNGLVGQSGKTHNCSICFKSFPSGQALGGHKRCHYDG-
pt017464_POPTR_ GGGEDQTTSSTTTSAITATKTVSNG----SGKTHECSICHKTFPTGQALGGHKRCHYEGI
                  . * ..*. *   :* . .:***    *****:****.*:**:************:* 

AT3G49930.1     ----------------GNGNSNGDNSHKFDLNLPADQVSDETIGKSQLSGE-ETKSVL--
pt017464_POPTR_ IGGGEKSGVTSTSESAGSTNTRTHSHNEFDLNIPA---LPEFSSCFSVSGEDEVMSPLPA
                                *. *:. .. ::****:**     *  .  .:*** *. * *  

AT3G49930.1     ------------------
pt017464_POPTR_ AKKLRISMPPRFEVSQAQ
BoxShade v3.31 C (beta, 970507) Output
AT3G49930.1     M A L D T L N S P T S T T T T T A P P P F L R C L D E T E P E N L E S W T K R K R T K R H R I D Q P N P P P S E E E Y L
pt017464_POPTR_    M A L E A L N S P - - - - - T T A P P S F - Q F E D L S L P C A G E P W V K R K R S K R P R L D H - - - Q P T E E E Y L
 
AT3G49930.1     A L C L L M L A R G S S D H H S P P S D H H S L S P L S D H Q K D Y K C S V C G K S F P S Y Q A L G G H K T S H R K P V
pt017464_POPTR_    A L C L V M L A R G H Q K S L T P S T V F T S - - - - S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A S H R K L A
 
AT3G49930.1     - - S V D V N N S N G T - - - V T N N G N I S N G L V G Q S G K T H N C S I C F K S F P S G Q A L G G H K R C H Y D G -
pt017464_POPTR_    G G G E D Q T T S S T T T S A I T A T K T V S N G - - - - S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y E G I
 
AT3G49930.1     - - - - - - - - - - - - - - - - G N G N S N G D N S H K F D L N L P A D Q V S D E T I G K S Q L S G E - E T K S V L - -
pt017464_POPTR_    I G G G E K S G V T S T S E S A G S T N T R T H S H N E F D L N I P A - - - L P E F S S C F S V S G E D E V M S P L P A
 
AT3G49930.1     - - - - - - - - - - - - - - - - - -
pt017464_POPTR_    A K K L R I S M P P R F E V S Q A Q
 
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