fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G49930.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039438 not found in 233aa AT1G27730.1 1st_not 0.444444444 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G49930.1     MALDTLNSPTSTTTTTAPP-PFLRCLDETEPENLESWTKRKRTKRHRIDQPNPPPSEEEY
gm039438_Glyma1 MALETLNSP----TTTAPSFPF---DDPTIP-----WAKRKRSKRCSRDH----PSEEEY
                ***:*****    *****. **    * * *     *:****:**   *:    ******

AT3G49930.1     LALCLLMLARGSSDHH--SPPSDHHSLSPLSDHQKDYKCSVCGKSFPSYQALGGHKTSHR
gm039438_Glyma1 LALCLIMLARGGTTRRVSTPPPQP---TPDPSTKLSYKCSVCNKSFPSYQALGGHKASHR
                *****:*****.: ::  :**.:    :* .. : .******.*************:***

AT3G49930.1     KPVSV---DVNNSNGTVTNNGNISNGLVGQSGKTHNCSICFKSFPSGQALGGHKRCHYDG
gm039438_Glyma1 KLAASGGEDQPTTTSSAASSANTASG-----GRTHECSICHKSFPTGQALGGHKRCHYEG
                * .:    *  .:..:.:...* :.*     *:**:****.****:************:*

AT3G49930.1     -GNGNSNGDNS-------------------HK-FDLNLPADQVSDETIGKSQLSGEETKS
gm039438_Glyma1 NSNGNNNNSNSSVTAASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVGEDEV--ESPHP
                 .***.*..**                   *: ****:**    . .:*:.::  *..:.

AT3G49930.1     VL-----------------
gm039438_Glyma1 VMKKPRPFVIPKIEIPQYQ
                *:
BoxShade v3.31 C (beta, 970507) Output
AT3G49930.1     M A L D T L N S P T S T T T T T A P P - P F L R C L D E T E P E N L E S W T K R K R T K R H R I D Q P N P P P S E E E Y
gm039438_Glyma1    M A L E T L N S P - - - - T T T A P S F P F - - - D D P T I P - - - - - W A K R K R S K R C S R D H - - - - P S E E E Y
 
AT3G49930.1     L A L C L L M L A R G S S D H H - - S P P S D H H S L S P L S D H Q K D Y K C S V C G K S F P S Y Q A L G G H K T S H R
gm039438_Glyma1    L A L C L I M L A R G G T T R R V S T P P P Q P - - - T P D P S T K L S Y K C S V C N K S F P S Y Q A L G G H K A S H R
 
AT3G49930.1     K P V S V - - - D V N N S N G T V T N N G N I S N G L V G Q S G K T H N C S I C F K S F P S G Q A L G G H K R C H Y D G
gm039438_Glyma1    K L A A S G G E D Q P T T T S S A A S S A N T A S G - - - - - G R T H E C S I C H K S F P T G Q A L G G H K R C H Y E G
 
AT3G49930.1     - G N G N S N G D N S - - - - - - - - - - - - - - - - - - - H K - F D L N L P A D Q V S D E T I G K S Q L S G E E T K S
gm039438_Glyma1    N S N G N N N N S N S S V T A A S E G V G S T H T V S H G H H R D F D L N I P A F P D F S T K V G E D E V - - E S P H P
 
AT3G49930.1     V L - - - - - - - - - - - - - - - - -
gm039438_Glyma1    V M K K P R P F V I P K I E I P Q Y Q
 
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