fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50060.1 EDPPTSLSLSLPGAEN at 203/301 in AT3G50060.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt037616 NDPPTSLSLSLPGADS in 213/330 AT4G37260.1 1st_not 0.489406779 II
Pt000862 not found in 351aa AT4G37260.1 not_not 0.466101694 III
Pt016180 VDPPTSLSLSLPGSIT in 195/311 AT5G67300.1 not_not 0.444915254 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G50060.1     MA------DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSP
pt016180_POPTR_ MASSRKDVDRIKGPWSPEEDEALQRLVQTYGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
pt000862_POPTR_ MATTRKEMDRIKGPWSPEEDEALKKLVQRHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
pt037616_POPTR_ MAITRKEMDRIKGPWSPEEDEALQKLVQKHGARNWSLISKSIPGRSGKSCRLRWCNQLSP
                **      **:***** **** *:::*: :*.**** ***********************

AT3G50060.1     EVEHRPFSPEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVT
pt016180_POPTR_ EVEHRPFSAEEDDTIIRAHARIGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMFDDL
pt000862_POPTR_ QVEHRAFTPEEDDRIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMADDG
pt037616_POPTR_ QVEHRPFTPDEDDTIIRAHARFGNKWATIARLLYGRTDNAIKNHWNSTLKRKCSSMAEDG
                :****.*:.:**: *: *:*::*********** ******:*************.     

AT3G50060.1     TVTET-------EEDQDRPKKRRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIPSPS
pt016180_POPTR_ N-----------DDAQQQPLK-RSASLGAG-----SGLHLNPSSPSGSDLSDSS-IPGVN
pt000862_POPTR_ NLSNLEGYDGNLDVDDTQPSK-RSVSAGSGV-PLSTGLYMSPGSPSGSDVSDSS-PPGLS
pt037616_POPTR_ NFCNREGYDGNLDGDNTQPLK-RSVSAGSGV-PVSTGLYMSPGSPSGSDVSDSS-LPGLS
                .           :  : :* * **.* .:.     :**::.* **.* *:****  *. .

AT3G50060.1     SPVA-QLFKPMPISGGFTVVPQPLPVEMSSSS-EDPPTSLSLSLPGAE--NTSSSHNNNN
pt016180_POPTR_ SS---PVFRPPVKTAS--LVPPSLSIDVSSPT-VDPPTSLSLSLPGSITCQAPGSGSSSG
pt000862_POPTR_ SAHNHNIYRPVARTGG--VLPPVETASSSDNNDDDPPTLLSLSLPGAD------PATKLP
pt037616_POPTR_ SSYNYNIYRPVARTGA--VMPPVETTSSSDNN-NDPPTSLSLSLPGAD-------SSEVS
                *.    :::*   :..  ::*   . . *. .  **** *******:         ..  

AT3G50060.1     NALMFPRF---------ESQMKINVEERG-------------------------------
pt016180_POPTR_ SHVVNPTPMVQTPAAPPQAAVAVQQQEQV-------------SFLQQKN-PGSRLEN---
pt000862_POPTR_ NRVVEPTH--ERVAGSTQERVAGSTKERVAGSTQEPKPNTVTSFLVAAD-PAQVTTPVVA
pt037616_POPTR_ NQVGEP--------------------------SQLPKSNTVTPLLTGRNAPAQEVSPAVG
                . :  *                                                      

AT3G50060.1     ----------EGRRGEFMTVVQEMIKAEVRSYMAEMQKT--SGGFVVGGLYESGGNGGFR
pt016180_POPTR_ ----------QFFSAEFLAVMQEMIRKEVRNYMSGIEQN----GLC---L----GTEAIR
pt000862_POPTR_ GQTGRPGCGFVGLSRELMTVMQEMIRREVRNYM--MEQS--GGGMCYQGM----SGEGFR
pt037616_POPTR_ GLSGS-----VGFNTEFMSVMQEMIRKEVRNYM--MEHSGVGGGMCYQGM----SGEGFR
                               *:::*:****: ***.**  :::.    *:    :    .  .:*

AT3G50060.1     DCGV----ITPKVE------
pt016180_POPTR_ NAVV-KRIGISRIE------
pt000862_POPTR_ NVAV-NRVGVGKIE------
pt037616_POPTR_ NVAVNNRVGLVKLSSEKWTG
                :  *       ::.
BoxShade v3.31 C (beta, 970507) Output
AT3G50060.1     M A - - - - - - D R V K G P W S Q E E D E Q L R R M V E K Y G P R N W S A I S K S I P G R S G K S C R L R W C N Q L S P
pt016180_POPTR_    M A S S R K D V D R I K G P W S P E E D E A L Q R L V Q T Y G P R N W S L I S K S I P G R S G K S C R L R W C N Q L S P
pt000862_POPTR_    M A T T R K E M D R I K G P W S P E E D E A L K K L V Q R H G P R N W S L I S K S I P G R S G K S C R L R W C N Q L S P
pt037616_POPTR_    M A I T R K E M D R I K G P W S P E E D E A L Q K L V Q K H G A R N W S L I S K S I P G R S G K S C R L R W C N Q L S P
 
AT3G50060.1     E V E H R P F S P E E D E T I V T A R A Q F G N K W A T I A R L L N G R T D N A V K N H W N S T L K R K C S G G V A V T
pt016180_POPTR_    E V E H R P F S A E E D D T I I R A H A R I G N K W A T I A R L L N G R T D N A I K N H W N S T L K R K C S S M F D D L
pt000862_POPTR_    Q V E H R A F T P E E D D R I I R A H A R F G N K W A T I A R L L N G R T D N A I K N H W N S T L K R K C S S M A D D G
pt037616_POPTR_    Q V E H R P F T P D E D D T I I R A H A R F G N K W A T I A R L L Y G R T D N A I K N H W N S T L K R K C S S M A E D G
 
AT3G50060.1     T V T E T - - - - - - - E E D Q D R P K K R R S V S F D S A F A P V D T G L Y M S P E S P N G I D V S D S S T I P S P S
pt016180_POPTR_    N - - - - - - - - - - - D D A Q Q Q P L K - R S A S L G A G - - - - - S G L H L N P S S P S G S D L S D S S - I P G V N
pt000862_POPTR_    N L S N L E G Y D G N L D V D D T Q P S K - R S V S A G S G V - P L S T G L Y M S P G S P S G S D V S D S S - P P G L S
pt037616_POPTR_    N F C N R E G Y D G N L D G D N T Q P L K - R S V S A G S G V - P V S T G L Y M S P G S P S G S D V S D S S - L P G L S
 
AT3G50060.1     S P V A - Q L F K P M P I S G G F T V V P Q P L P V E M S S S S - E D P P T S L S L S L P G A E - - N T S S S H N N N N
pt016180_POPTR_    S S - - - P V F R P P V K T A S - - L V P P S L S I D V S S P T - V D P P T S L S L S L P G S I T C Q A P G S G S S S G
pt000862_POPTR_    S A H N H N I Y R P V A R T G G - - V L P P V E T A S S S D N N D D D P P T L L S L S L P G A D - - - - - - P A T K L P
pt037616_POPTR_    S S Y N Y N I Y R P V A R T G A - - V M P P V E T T S S S D N N - N D P P T S L S L S L P G A D - - - - - - - S S E V S
 
AT3G50060.1     N A L M F P R F - - - - - - - - - E S Q M K I N V E E R G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt016180_POPTR_    S H V V N P T P M V Q T P A A P P Q A A V A V Q Q Q E Q V - - - - - - - - - - - - - S F L Q Q K N - P G S R L E N - - -
pt000862_POPTR_    N R V V E P T H - - E R V A G S T Q E R V A G S T K E R V A G S T Q E P K P N T V T S F L V A A D - P A Q V T T P V V A
pt037616_POPTR_    N Q V G E P - - - - - - - - - - - - - - - - - - - - - - - - - - S Q L P K S N T V T P L L T G R N A P A Q E V S P A V G
 
AT3G50060.1     - - - - - - - - - - E G R R G E F M T V V Q E M I K A E V R S Y M A E M Q K T - - S G G F V V G G L Y E S G G N G G F R
pt016180_POPTR_    - - - - - - - - - - Q F F S A E F L A V M Q E M I R K E V R N Y M S G I E Q N - - - - G L C - - - L - - - - G T E A I R
pt000862_POPTR_    G Q T G R P G C G F V G L S R E L M T V M Q E M I R R E V R N Y M - - M E Q S - - G G G M C Y Q G M - - - - S G E G F R
pt037616_POPTR_    G L S G S - - - - - V G F N T E F M S V M Q E M I R K E V R N Y M - - M E H S G V G G G M C Y Q G M - - - - S G E G F R
 
AT3G50060.1     D C G V - - - - I T P K V E - - - - - -
pt016180_POPTR_    N A V V - K R I G I S R I E - - - - - -
pt000862_POPTR_    N V A V - N R V G V G K I E - - - - - -
pt037616_POPTR_    N V A V N N R V G L V K L S S E K W T G
 
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