fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt036987 not found in 181aa AT5G67190.1 1st_not 0.561837455 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50260.1     MDAGVAVKADVAVK----MKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAA
pt036987_POPTR_ MESG--VDKDMATRKRGGMESERQYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAA
                *::*  *. *:*.:    *: ** :***********************:******** **

AT3G50260.1     ARAYDTAVFYLRGPTATLNFPELLPCT------SAEDMSAATIRKKATEVGAQVDAIGAT
pt036987_POPTR_ ARAYDTAVFYLRGPSARLNFPEVLAAEGFGGGGSCGDMSAASIRKRATEVGAHVDAIETA
                **************:* *****:*..       *. *****:***:******:**** ::

AT3G50260.1     V---------VQNNKRRR---VFSQKRDFGGGLL---EL----VDLNKLPDPENLDDDLV
pt036987_POPTR_ LNHHHHHHHHLHHDDRQRNSNNSSSSNDNNETVVDSRELKPRPVDLNKVPDPEDSDGDEW
                :         ::::.*:*     *...* .  ::   **    *****:****: *.*  

AT3G50260.1     GK-
pt036987_POPTR_ KRS
                 :
BoxShade v3.31 C (beta, 970507) Output
AT3G50260.1     M D A G V A V K A D V A V K - - - - M K R E R P F K G I R M R K W G K W V A E I R E P N K R S R L W L G S Y S T P E A A
pt036987_POPTR_    M E S G - - V D K D M A T R K R G G M E S E R Q Y K G I R M R K W G K W V A E I R E P N K R S R I W L G S Y S T P V A A
 
AT3G50260.1     A R A Y D T A V F Y L R G P T A T L N F P E L L P C T - - - - - - S A E D M S A A T I R K K A T E V G A Q V D A I G A T
pt036987_POPTR_    A R A Y D T A V F Y L R G P S A R L N F P E V L A A E G F G G G G S C G D M S A A S I R K R A T E V G A H V D A I E T A
 
AT3G50260.1     V - - - - - - - - - V Q N N K R R R - - - V F S Q K R D F G G G L L - - - E L - - - - V D L N K L P D P E N L D D D L V
pt036987_POPTR_    L N H H H H H H H H L H H D D R Q R N S N N S S S S N D N N E T V V D S R E L K P R P V D L N K V P D P E D S D G D E W
 
AT3G50260.1     G K -
pt036987_POPTR_    K R S
 
0