fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt001651 not found in 187aa AT5G67190.1 not_not 0.554770318 III
Pt016489 not found in 155aa AT1G46768.1 not_not 0.537102473 III
Pt038369 not found in 158aa AT1G46768.1 not_not 0.519434628 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G50260.1     MDAGV----------AVKADVAVK-----MKRERPFKGIRMRKWGKWVAEIREPNKRSRL
pt001651_POPTR_ MESG------------VDKEMATRKRG-GMGSERQYKGIRMRKWGKWVAEIREPNKRSRI
pt016489_POPTR_ MEGGCCTSSTSTPSSTSTATTEKRKHSRQQNQEKPYRGIRMRKWGKWVAEIREPNKRSRI
pt038369_POPTR_ MEGECYTSPSASSSTPTISSIGKRKHGRQQNQEKPYRGIRMRKWGKWVAEIREPNKRSRI
                *:.                    :        *: ::**********************:

AT3G50260.1     WLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL-----PC-TSAEDMSAATIRKKATE
pt001651_POPTR_ WLGSYSTPVAAARAYDTAVFYLRGPSARLNFPEFLAGENFSCGGSYGDMSAASIRKRATE
pt016489_POPTR_ WLGSYSTPIAAARAYDTAVFYLRGPSARLNFPDLIYQEDELR-----DVSAASIRKKATE
pt038369_POPTR_ WLGSYSTPIAAARAYDTAVFYLRGPSVRLNFPDLIHQEDELC-----DVSAASIRKKATE
                ******** ****************:. ****:::            *:***:***:***

AT3G50260.1     VGAQVDAIGATVVQNNKRRRVFSQKRDFGGGL------------LEL----VDLNKLPDP
pt001651_POPTR_ VGARVDAF-ETALNHHHHRHHDDRQRNSSNSTSSNDNNETVVDSRELKSRPVDLNKVPDP
pt016489_POPTR_ VGAKVDAL-QTAVH-----------------ASPEDNS------RVLLSEKPDLNKF--P
pt038369_POPTR_ VGAKVDAL-QTALH-----------------ASPGDNSPA---NRLLLSEKPDLNEY--P
                ***:***:  *.::                                *     ***:   *

AT3G50260.1     ENLDDDLVGK-----------
pt001651_POPTR_ EDSDGDEWERSLATGGNPMGC
pt016489_POPTR_ ENSDEE---------------
pt038369_POPTR_ ENCDEE---------------
                *: * :
BoxShade v3.31 C (beta, 970507) Output
AT3G50260.1     M D A G V - - - - - - - - - - A V K A D V A V K - - - - - M K R E R P F K G I R M R K W G K W V A E I R E P N K R S R L
pt001651_POPTR_    M E S G - - - - - - - - - - - - V D K E M A T R K R G - G M G S E R Q Y K G I R M R K W G K W V A E I R E P N K R S R I
pt016489_POPTR_    M E G G C C T S S T S T P S S T S T A T T E K R K H S R Q Q N Q E K P Y R G I R M R K W G K W V A E I R E P N K R S R I
pt038369_POPTR_    M E G E C Y T S P S A S S S T P T I S S I G K R K H G R Q Q N Q E K P Y R G I R M R K W G K W V A E I R E P N K R S R I
 
AT3G50260.1     W L G S Y S T P E A A A R A Y D T A V F Y L R G P T A T L N F P E L L - - - - - P C - T S A E D M S A A T I R K K A T E
pt001651_POPTR_    W L G S Y S T P V A A A R A Y D T A V F Y L R G P S A R L N F P E F L A G E N F S C G G S Y G D M S A A S I R K R A T E
pt016489_POPTR_    W L G S Y S T P I A A A R A Y D T A V F Y L R G P S A R L N F P D L I Y Q E D E L R - - - - - D V S A A S I R K K A T E
pt038369_POPTR_    W L G S Y S T P I A A A R A Y D T A V F Y L R G P S V R L N F P D L I H Q E D E L C - - - - - D V S A A S I R K K A T E
 
AT3G50260.1     V G A Q V D A I G A T V V Q N N K R R R V F S Q K R D F G G G L - - - - - - - - - - - - L E L - - - - V D L N K L P D P
pt001651_POPTR_    V G A R V D A F - E T A L N H H H H R H H D D R Q R N S S N S T S S N D N N E T V V D S R E L K S R P V D L N K V P D P
pt016489_POPTR_    V G A K V D A L - Q T A V H - - - - - - - - - - - - - - - - - A S P E D N S - - - - - - R V L L S E K P D L N K F - - P
pt038369_POPTR_    V G A K V D A L - Q T A L H - - - - - - - - - - - - - - - - - A S P G D N S P A - - - N R L L L S E K P D L N E Y - - P
 
AT3G50260.1     E N L D D D L V G K - - - - - - - - - - -
pt001651_POPTR_    E D S D G D E W E R S L A T G G N P M G C
pt016489_POPTR_    E N S D E E - - - - - - - - - - - - - - -
pt038369_POPTR_    E N C D E E - - - - - - - - - - - - - - -
 
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