fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb033446 not found in 424aa AT2G23340.1 1st_not 0.459363957 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50260.1     -------------------MDAGVAVKADVAVKMKRERPFKGIRMRKWGKWVAEIREPNK
Sb033446_Sorbi1 PHDHHHHPRRSGNKLLLPNQPGGWRGTPLPSARRRSPRRLPRFRCRPRRCWAPVVERLRR
                                     .*   ..  :.: :  * :  :* *    *.. :.. .:

AT3G50260.1     RSRLWLGSYSTPEAAARAYD-------TAVFYL----------------RG-------PT
Sb033446_Sorbi1 RQ-------GTAEAAAEVEEEEEEGGSIAAFGCASGASGWRRSASRTSGRGSGWVPTPPP
                *.       .*.****.. :        *.*                  **       *.

AT3G50260.1     ATLNFPELLPCTSAEDM-------SAATIRK-----KATEVGAQVDAIGATVVQNNKRR-
Sb033446_Sorbi1 SPPRAPTTRPCSTSAAAPRGSTSPTSSTARRWPITPRAT--GTAARGRGSRPPPSARRRP
                :. . *   **:::          :::* *:     :**  *: . . *:    . :** 

AT3G50260.1     ----------------------------------------------RVFSQKRDFGGGLL
Sb033446_Sorbi1 RSAPASTRSTAALALASLAAVLPLRSRCRPTIAAAPRTPTSTGSPPRTPQTTSDFVVVLL
                                                              *. . . **   **

AT3G50260.1     ELVDLNKLPDPEN----LDDDLVGK-
Sb033446_Sorbi1 -------LPHPSTTLLVLRQNYSPKG
                       **.*..    * ::   *
BoxShade v3.31 C (beta, 970507) Output
AT3G50260.1     - - - - - - - - - - - - - - - - - - - M D A G V A V K A D V A V K M K R E R P F K G I R M R K W G K W V A E I R E P N K
Sb033446_Sorbi1    P H D H H H H P R R S G N K L L L P N Q P G G W R G T P L P S A R R R S P R R L P R F R C R P R R C W A P V V E R L R R
 
AT3G50260.1     R S R L W L G S Y S T P E A A A R A Y D - - - - - - - T A V F Y L - - - - - - - - - - - - - - - - R G - - - - - - - P T
Sb033446_Sorbi1    R Q - - - - - - - G T A E A A A E V E E E E E E G G S I A A F G C A S G A S G W R R S A S R T S G R G S G W V P T P P P
 
AT3G50260.1     A T L N F P E L L P C T S A E D M - - - - - - - S A A T I R K - - - - - K A T E V G A Q V D A I G A T V V Q N N K R R -
Sb033446_Sorbi1    S P P R A P T T R P C S T S A A A P R G S T S P T S S T A R R W P I T P R A T - - G T A A R G R G S R P P P S A R R R P
 
AT3G50260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - R V F S Q K R D F G G G L L
Sb033446_Sorbi1    R S A P A S T R S T A A L A L A S L A A V L P L R S R C R P T I A A A P R T P T S T G S P P R T P Q T T S D F V V V L L
 
AT3G50260.1     E L V D L N K L P D P E N - - - - L D D D L V G K -
Sb033446_Sorbi1    - - - - - - - L P H P S T T L L V L R Q N Y S P K G
 
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