fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb030094 not found in 461aa AT2G23340.1 not_not 0.445229681 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50260.1     -----------------------------------MDAGVAVKADVAVKMKRER---PFK
Sb030094_Sorbi1 RDGREGSQENHANAKSSCRYHCCCCCCTCLHNPQPPSAGPQVRASEREREKRQRLQQPAK
                                                    .**  *:*.   : **:*   * *

AT3G50260.1     ------------------------------------------------------------
Sb030094_Sorbi1 AGAHAGRVPVFQRGVGGRGRGSSSSSRSRCHGSSCGRRSRRGEDGGGAGCDGGGRCGGAA
                                                                            

AT3G50260.1     -----------------------------------------------------GIRMRKW
Sb030094_Sorbi1 AGVGAPAPPAADAAASAVPRRAHAEVGQVGGGDPGAAQAHAHLAGVLRHGRGGGARLRH-
                                                                     * *:*: 

AT3G50260.1     GKWV-------AEI--REP--------------NKRSRLWLGSYST----PEAAARA---
Sb030094_Sorbi1 GRVLPSRPVGAAQLPRRDPLAVAVGGRARGRGDRPRRRWWRRRHAVRGVHPEEGHRGGVP
                *: :       *::  *:*              . * * *   ::.    ** . *.   

AT3G50260.1     -------YDTAVFYLRGPTATLNFPEL--LPCTSAEDMSAATIRKK---ATEVGAQVDAI
Sb030094_Sorbi1 RGRAPDRHDGA------PAAPPRAPEAPPPPPPPPPPAAAACPRARGGGAPPAGAEAVAA
                       :* *      *:*. . **    * ...   :**  * :   *. .**:. * 

AT3G50260.1     GATVVQNNK-------------RRRVFSQKRDFGGGL-------------------LELV
Sb030094_Sorbi1 AASVERARQEPGSKPGAEPRELRRRVTSERASDTARLNVNDDVRYRLFPFPRRRPALQHM
                .*:* : .:             **** *:: .  . *                   *: :

AT3G50260.1     DLNKLPDPENLDDDLVGK
Sb030094_Sorbi1 PLSS-PSPRTYDDPS---
                 *.. *.*.. **
BoxShade v3.31 C (beta, 970507) Output
AT3G50260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M D A G V A V K A D V A V K M K R E R - - - P F K
Sb030094_Sorbi1    R D G R E G S Q E N H A N A K S S C R Y H C C C C C C T C L H N P Q P P S A G P Q V R A S E R E R E K R Q R L Q Q P A K
 
AT3G50260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sb030094_Sorbi1    A G A H A G R V P V F Q R G V G G R G R G S S S S S R S R C H G S S C G R R S R R G E D G G G A G C D G G G R C G G A A
 
AT3G50260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - G I R M R K W
Sb030094_Sorbi1    A G V G A P A P P A A D A A A S A V P R R A H A E V G Q V G G G D P G A A Q A H A H L A G V L R H G R G G G A R L R H -
 
AT3G50260.1     G K W V - - - - - - - A E I - - R E P - - - - - - - - - - - - - - N K R S R L W L G S Y S T - - - - P E A A A R A - - -
Sb030094_Sorbi1    G R V L P S R P V G A A Q L P R R D P L A V A V G G R A R G R G D R P R R R W W R R R H A V R G V H P E E G H R G G V P
 
AT3G50260.1     - - - - - - - Y D T A V F Y L R G P T A T L N F P E L - - L P C T S A E D M S A A T I R K K - - - A T E V G A Q V D A I
Sb030094_Sorbi1    R G R A P D R H D G A - - - - - - P A A P P R A P E A P P P P P P P P P P A A A A C P R A R G G G A P P A G A E A V A A
 
AT3G50260.1     G A T V V Q N N K - - - - - - - - - - - - - R R R V F S Q K R D F G G G L - - - - - - - - - - - - - - - - - - - L E L V
Sb030094_Sorbi1    A A S V E R A R Q E P G S K P G A E P R E L R R R V T S E R A S D T A R L N V N D D V R Y R L F P F P R R R P A L Q H M
 
AT3G50260.1     D L N K L P D P E N L D D D L V G K
Sb030094_Sorbi1    P L S S - P S P R T Y D D P S - - -
 
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