fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm001918 not found in 168aa AT4G36900.1 1st_not 0.579505300 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50260.1     MDA-----GVAVKADVAVKMKR--ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTP
gm001918_Glyma0 MESEGRREGGERETTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTP
                *::     *   :: .*.:  .  ** :***********************:********

AT3G50260.1     EAAARAYDTAVFYLRGPTATLNFPELL------PCTSAEDMSAATIRKKATEVGAQVDAI
gm001918_Glyma0 VAAARAYDTAVFYLRGPSARLNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDAL
                 ****************:* *******      . .:. *****:**********:***:

AT3G50260.1     GATVVQNN-KRRRVFSQKRDFGGG------LLELVDLNKLPDPENLDDDLVGK
gm001918_Glyma0 QATLHHHYVPPRQLLS-----GGGGGSGDFPVRVVDLNKMPEPESSDCEWDVN
                 **: ::    *:::*     ***       :.:*****:*:**. * :   :
BoxShade v3.31 C (beta, 970507) Output
AT3G50260.1     M D A - - - - - G V A V K A D V A V K M K R - - E R P F K G I R M R K W G K W V A E I R E P N K R S R L W L G S Y S T P
gm001918_Glyma0    M E S E G R R E G G E R E T T A A T R K V E G A E R R Y K G I R M R K W G K W V A E I R E P N K R S R I W L G S Y S T P
 
AT3G50260.1     E A A A R A Y D T A V F Y L R G P T A T L N F P E L L - - - - - - P C T S A E D M S A A T I R K K A T E V G A Q V D A I
gm001918_Glyma0    V A A A R A Y D T A V F Y L R G P S A R L N F P E L L V R E G P A A L V A G C D M S A A S I R K K A T E V G A R V D A L
 
AT3G50260.1     G A T V V Q N N - K R R R V F S Q K R D F G G G - - - - - - L L E L V D L N K L P D P E N L D D D L V G K
gm001918_Glyma0    Q A T L H H H Y V P P R Q L L S - - - - - G G G G G S G D F P V R V V D L N K M P E P E S S D C E W D V N
 
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