fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt038588 not found in 261aa AT5G67060.1 not_not 0.406528189 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50330.1     --MDN----SDILMNMMMQQMEKLPEHFSNSN---PNPNPHNIMMLSESNTHPFFFNPTH
pt038588_POPTR_ MEIDQLRSATEDQMEMMM-LMDKLPEFYDSYNDVADHLSPTEFLAASASNISISHFNTDN
                  :*:    ::  *:***  *:****.:.. *    : .* :::  * **    .**. :

AT3G50330.1     SHLPFDQTMPHHQPGLNFR-------------------YAPSPSSS-------LPEKRGG
pt038588_POPTR_ PH---NASSP---PFMNLQSTLSSNSNSTPTQDQSPQDFFPSPSSSRWRGLGELPE----
                .*   : : *   * :*::                   : ******       ***    

AT3G50330.1     CSDNA-------NMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRR
pt038588_POPTR_ ANDYATPSQKKNSMATMREMIFRIAAMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRR
                ..* *       .**:*********.****:***********:**:**************

AT3G50330.1     ERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGG
pt038588_POPTR_ ERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERFQ-ANRPTTTTGIGF
                *************************************.******..  .*    *:  * 

AT3G50330.1     ALAGTVGG----GYGGKGCGIMRSDHHQMLGNAQILR
pt038588_POPTR_ PVAMTSGSYLPMGKGYHQPPARRRQNVQNYGDA----
                .:* * *.    * * :     * :: *  *:*
BoxShade v3.31 C (beta, 970507) Output
AT3G50330.1     - - M D N - - - - S D I L M N M M M Q Q M E K L P E H F S N S N - - - P N P N P H N I M M L S E S N T H P F F F N P T H
pt038588_POPTR_    M E I D Q L R S A T E D Q M E M M M - L M D K L P E F Y D S Y N D V A D H L S P T E F L A A S A S N I S I S H F N T D N
 
AT3G50330.1     S H L P F D Q T M P H H Q P G L N F R - - - - - - - - - - - - - - - - - - - Y A P S P S S S - - - - - - - L P E K R G G
pt038588_POPTR_    P H - - - N A S S P - - - P F M N L Q S T L S S N S N S T P T Q D Q S P Q D F F P S P S S S R W R G L G E L P E - - - -
 
AT3G50330.1     C S D N A - - - - - - - N M A A M R E M I F R I A V M Q P I H I D P E S V K P P K R K N V R I S K D P Q S V A A R H R R
pt038588_POPTR_    A N D Y A T P S Q K K N S M A T M R E M I F R I A A M Q P I Q I D P E S V K P P K R R N V K I S K D P Q S V A A R H R R
 
AT3G50330.1     E R I S E R I R I L Q R L V P G G T K M D T A S M L D E A I H Y V K F L K K Q V Q S L E E H A V V N G G G M T A V A G G
pt038588_POPTR_    E R I S E R I R I L Q R L V P G G T K M D T A S M L D E A I H Y V K F L K T Q V Q S L E R F Q - A N R P T T T T G I G F
 
AT3G50330.1     A L A G T V G G - - - - G Y G G K G C G I M R S D H H Q M L G N A Q I L R
pt038588_POPTR_    P V A M T S G S Y L P M G K G Y H Q P P A R R R Q N V Q N Y G D A - - - -
 
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