fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm003204 not found in 204aa AT3G50410.1 not_1st 0.453681710 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50410.1     MPTSDSGEPRRIAMKP--NGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCK
gm003204_Glyma0 MPSSNSGESRR-ASKPQSSGGAAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCK
                **:*:***.** * **  .* :.* . :**:********:***********:********

AT3G50410.1     ACRRYWTHGGTLRDVPVGGGTRKSAKRSRT--CSNSSSSSVSGVVSNSNGVPLQTTPVLF
gm003204_Glyma0 SCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHVAATSSSSTSSTMTNGNG----------
                :*************:*****:**.******   : :****.*..::*.**          

AT3G50410.1     PQSSISNGVTHTVTESDGKGSALSLCGSFTSTLLNHNAAATATHGSGSVIGIGGFGIGLG
gm003204_Glyma0 -----------------------NVCGSFTSLLNN-------THGSG-FLALGGF--GLG
                                       .:****** * *       ***** .:.:***  ***

AT3G50410.1     SGFDDVSFGLGRAMWPFSTVGTATTTNVGSNGGHHAVPMPATWQFEGLESNAGGGFVSGE
gm003204_Glyma0 HGYDDMGFGIGRSGWAFPGM-----VDGGNIGGAVASSGLNTWQLESGE----GGFVSGD
                 *:**:.**:**: *.*. :     .: *. **  * .   ***:*. *    ******:

AT3G50410.1     YFAWPDLSITTPGNSLK
gm003204_Glyma0 CFAWPGLAISTPGNGLK
                 ****.*:*:****.**
BoxShade v3.31 C (beta, 970507) Output
AT3G50410.1     M P T S D S G E P R R I A M K P - - N G V T V P I S D Q Q E Q L P C P R C D S S N T K F C Y Y N N Y N F S Q P R H F C K
gm003204_Glyma0    M P S S N S G E S R R - A S K P Q S S G G A A P P P P E Q E N L P C P R C D S T N T K F C Y Y N N Y N Y S Q P R H F C K
 
AT3G50410.1     A C R R Y W T H G G T L R D V P V G G G T R K S A K R S R T - - C S N S S S S S V S G V V S N S N G V P L Q T T P V L F
gm003204_Glyma0    S C R R Y W T H G G T L R D I P V G G G S R K N A K R S R T H H V A A T S S S S T S S T M T N G N G - - - - - - - - - -
 
AT3G50410.1     P Q S S I S N G V T H T V T E S D G K G S A L S L C G S F T S T L L N H N A A A T A T H G S G S V I G I G G F G I G L G
gm003204_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - N V C G S F T S L L N N - - - - - - - T H G S G - F L A L G G F - - G L G
 
AT3G50410.1     S G F D D V S F G L G R A M W P F S T V G T A T T T N V G S N G G H H A V P M P A T W Q F E G L E S N A G G G F V S G E
gm003204_Glyma0    H G Y D D M G F G I G R S G W A F P G M - - - - - V D G G N I G G A V A S S G L N T W Q L E S G E - - - - G G F V S G D
 
AT3G50410.1     Y F A W P D L S I T T P G N S L K
gm003204_Glyma0    C F A W P G L A I S T P G N G L K
 
1