fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm044750 not found in 236aa AT3G50410.1 1st_1st 0.453681710 Ia
Gm003204 not found in 204aa AT3G50410.1 not_1st 0.453681710 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G50410.1     MPTSDSGEPRRIAMKPNGV--TVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCK
gm003204_Glyma0 MPSSNSGESRR-ASKPQSSGGAAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCK
gm044750_Glyma1 MPSSNSGESRR-ASKPHRS--VAAPPVEPENLPCPRCDSANTKFCYYNNYNYSQPRHFCK
                **:*:***.** * **:    ... . : *:********:***********:********

AT3G50410.1     ACRRYWTHGGTLRDVPVGGGTRKSAKRSRT----CSNSSSSSVSGVVSNS----NGVPLQ
gm003204_Glyma0 SCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHVAA--TSSSSTSSTMTNG----------
gm044750_Glyma1 SCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHAAAATSSSSSTSSATTSAHEHHNA---H
                :*************:*****:**.******    .  :****.*.. :..          

AT3G50410.1     TTPVLFPQSSISNGVTHTVTESDGKGSALSLCGSFTSTLLNHNAAATATHGSGSVIGIGG
gm003204_Glyma0 ---------------------------NGNVCGSFTSLLNN-------THGSG-FLALGG
gm044750_Glyma1 TLTALAPVTA----ATHFGHDGDVKQTNGNACGSYTSLLNN-------TQGSG-FFALGG
                                             . ***:** * *       *:*** .:.:**

AT3G50410.1     FGIGLGSGFDDVSFGLGRAMWPFSTVGTATTTNVGSNGGHHAVPMPATWQFEGLESNAGG
gm003204_Glyma0 F--GLGHGYDDMGFGIGRSGWAFPGM-----VDGGNIGGAVASSGLNTWQLESGE----G
gm044750_Glyma1 FGLGLGHGFDDMGFGIGRSGWAFPGM-----VDNGNIGGAIASSGVNTWQLESGE----G
                *  *** *:**:.**:**: *.*. :     .: *. **  * .   ***:*. *    *

AT3G50410.1     GFVSGEYFAWPDLSITTPGNSLK
gm003204_Glyma0 GFVSGDCFAWPGLAISTPGNGLK
gm044750_Glyma1 GFVGGDCFSWPGLAISTPGNGLK
                ***.*: *:**.*:*:****.**
BoxShade v3.31 C (beta, 970507) Output
AT3G50410.1     M P T S D S G E P R R I A M K P N G V - - T V P I S D Q Q E Q L P C P R C D S S N T K F C Y Y N N Y N F S Q P R H F C K
gm003204_Glyma0    M P S S N S G E S R R - A S K P Q S S G G A A P P P P E Q E N L P C P R C D S T N T K F C Y Y N N Y N Y S Q P R H F C K
gm044750_Glyma1    M P S S N S G E S R R - A S K P H R S - - V A A P P V E P E N L P C P R C D S A N T K F C Y Y N N Y N Y S Q P R H F C K
 
AT3G50410.1     A C R R Y W T H G G T L R D V P V G G G T R K S A K R S R T - - - - C S N S S S S S V S G V V S N S - - - - N G V P L Q
gm003204_Glyma0    S C R R Y W T H G G T L R D I P V G G G S R K N A K R S R T H H V A A - - T S S S S T S S T M T N G - - - - - - - - - -
gm044750_Glyma1    S C R R Y W T H G G T L R D I P V G G G S R K N A K R S R T H H A A A A T S S S S S T S S A T T S A H E H H N A - - - H
 
AT3G50410.1     T T P V L F P Q S S I S N G V T H T V T E S D G K G S A L S L C G S F T S T L L N H N A A A T A T H G S G S V I G I G G
gm003204_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - N G N V C G S F T S L L N N - - - - - - - T H G S G - F L A L G G
gm044750_Glyma1    T L T A L A P V T A - - - - A T H F G H D G D V K Q T N G N A C G S Y T S L L N N - - - - - - - T Q G S G - F F A L G G
 
AT3G50410.1     F G I G L G S G F D D V S F G L G R A M W P F S T V G T A T T T N V G S N G G H H A V P M P A T W Q F E G L E S N A G G
gm003204_Glyma0    F - - G L G H G Y D D M G F G I G R S G W A F P G M - - - - - V D G G N I G G A V A S S G L N T W Q L E S G E - - - - G
gm044750_Glyma1    F G L G L G H G F D D M G F G I G R S G W A F P G M - - - - - V D N G N I G G A I A S S G V N T W Q L E S G E - - - - G
 
AT3G50410.1     G F V S G E Y F A W P D L S I T T P G N S L K
gm003204_Glyma0    G F V S G D C F A W P G L A I S T P G N G L K
gm044750_Glyma1    G F V G G D C F S W P G L A I S T P G N G L K
 
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