fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50750.1 DVGIDDLELTLGHNTK at 262/276 in AT3G50750.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm001807 EVGMDDLELTLGVGKA in 298/308 AT1G19350.6 1st_not 0.5675 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50750.1     MTASGGGSTAATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVL
gm001807_Glyma0 MT--GGGS---TGRLPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVL
                **  ****   ***:**********:************:****:****************

AT3G50750.1     KALCLEAGWIVHEDGTTYRKG-SRPTETT--VP-----CSSIQLSPQSSAFQSPIPSYQA
gm001807_Glyma0 KALCAEAGWIVEEDGTTYRKGCKRPTSEIGGTPLNLSACSSIQASPQSSSYPSPVPSYHA
                **** ******.********* .***.    .*     ***** *****:: **:***:*

AT3G50750.1     SPSSSSYPSPTRFDPNQSSTYLIPYLQNLAS-SGNLAPLRISNSAPVTPPISSPRRSNPR
gm001807_Glyma0 SPTSSSFPSPTRIDGNHPSSFLIPFIRNITSIPANLPPLRISNSAPVTPPLSSP-RSSKR
                **:***:*****:* *:.*::***:::*::* ..**.*************:*** **. *

AT3G50750.1     LPRWQSSNFPV---SAPSSPTRRLHHYTS-IPECDESDVSTVDSC--RWGNFQ----SVN
gm001807_Glyma0 KADFDSLRHPLFATSAPSSPTRRHHVATSTIPECDESDASTVDSASGRWVSFQVQTTMVA
                 . ::* ..*:   ********* *  ** ********.*****.  ** .**     * 

AT3G50750.1     VSQTCPPSPTFNLVGKSVSSV-----------------GVDVS-----VKPWEGEKIHDV
gm001807_Glyma0 AAAAAPPSPTFNLMKPAMQQIAAQEGMQWGSVAERGRGGSDFDFENGRVKPWEGERIHEV
                .: :.********:  ::..:                 * *..     *******:**:*

AT3G50750.1     GIDDLELTLGHNTKGRG
gm001807_Glyma0 GMDDLELTLG---VGKA
                *:********    *:.
BoxShade v3.31 C (beta, 970507) Output
AT3G50750.1     M T A S G G G S T A A T G R M P T W K E R E N N K K R E R R R R A I A A K I F T G L R S Q G N Y K L P K H C D N N E V L
gm001807_Glyma0    M T - - G G G S - - - T G R L P T W K E R E N N K R R E R R R R A I A A K I Y T G L R A Q G N Y K L P K H C D N N E V L
 
AT3G50750.1     K A L C L E A G W I V H E D G T T Y R K G - S R P T E T T - - V P - - - - - C S S I Q L S P Q S S A F Q S P I P S Y Q A
gm001807_Glyma0    K A L C A E A G W I V E E D G T T Y R K G C K R P T S E I G G T P L N L S A C S S I Q A S P Q S S S Y P S P V P S Y H A
 
AT3G50750.1     S P S S S S Y P S P T R F D P N Q S S T Y L I P Y L Q N L A S - S G N L A P L R I S N S A P V T P P I S S P R R S N P R
gm001807_Glyma0    S P T S S S F P S P T R I D G N H P S S F L I P F I R N I T S I P A N L P P L R I S N S A P V T P P L S S P - R S S K R
 
AT3G50750.1     L P R W Q S S N F P V - - - S A P S S P T R R L H H Y T S - I P E C D E S D V S T V D S C - - R W G N F Q - - - - S V N
gm001807_Glyma0    K A D F D S L R H P L F A T S A P S S P T R R H H V A T S T I P E C D E S D A S T V D S A S G R W V S F Q V Q T T M V A
 
AT3G50750.1     V S Q T C P P S P T F N L V G K S V S S V - - - - - - - - - - - - - - - - - G V D V S - - - - - V K P W E G E K I H D V
gm001807_Glyma0    A A A A A P P S P T F N L M K P A M Q Q I A A Q E G M Q W G S V A E R G R G G S D F D F E N G R V K P W E G E R I H E V
 
AT3G50750.1     G I D D L E L T L G H N T K G R G
gm001807_Glyma0    G M D D L E L T L G - - - V G K A
 
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