fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G50870.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt002821 not found in 254aa AT3G50870.1 not_1st 0.404990403 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G50870.1     MMQTPYTTSTQGQYCH-----SCGMFHHHSQSCCYNNNNNSNAGSYSMVFSMQNGGVFEQ
pt002821_POPTR_ MMHR--CSSSQ---CNMVGSCSCGMYH-------------SQSNSFSMLFSM--------
                **:    :*:*   *:     ****:*             *::.*:**:***        

AT3G50870.1     NGEDYHHS------------SSLVDCTLSLGTPSTRLCEEDEKRRRSTSSGASSCISNF-
pt002821_POPTR_ --PDHHKSFDETDMYPFTPPSSSVDCTLSLGTPSTRLSEDDEKRTRHDQRRSGSCMSNYC
                   *:*:*            ** **************.*:**** *  .  :.**:**: 

AT3G50870.1     WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCANCDTTST
pt002821_POPTR_ WDILQTKNDSTPYPP-------QAHKTSRGNNTCHGSNSNFANNDPLLARRCANCDTTST
                **:::***:.:  .*       .*:*.*** .   *.... ...*.**************

AT3G50870.1     PLWRNGPRGPKSLCNACGIRFKKEERRTTAATG-NTVVGAAPVQTDQYGHHNSGYNNYHA
pt002821_POPTR_ PLWRNGPRGPKSLCNACGIRFKKEERRATAANASNANANASGGMEQHYGYH---------
                ***************************:***.. *: ..*:    ::**:*         

AT3G50870.1     ATNNNNNNGTPWAHHHSTQRVPCNYPANEIRFMDDYGSGVANNVESDGAHGGVPFLSWRL
pt002821_POPTR_ ----QNNS---WVQN---QKMPCFSPANEFSFIED------NDRDSDT--GNIPFLSWRL
                    :**.   *.::   *::**  ****: *::*      *: :**   *.:*******

AT3G50870.1     NVADRAS-LVHDFTR-
pt002821_POPTR_ NVTDRPSQLVHDFTRY
                **:**.* *******
BoxShade v3.31 C (beta, 970507) Output
AT3G50870.1     M M Q T P Y T T S T Q G Q Y C H - - - - - S C G M F H H H S Q S C C Y N N N N N S N A G S Y S M V F S M Q N G G V F E Q
pt002821_POPTR_    M M H R - - C S S S Q - - - C N M V G S C S C G M Y H - - - - - - - - - - - - - S Q S N S F S M L F S M - - - - - - - -
 
AT3G50870.1     N G E D Y H H S - - - - - - - - - - - - S S L V D C T L S L G T P S T R L C E E D E K R R R S T S S G A S S C I S N F -
pt002821_POPTR_    - - P D H H K S F D E T D M Y P F T P P S S S V D C T L S L G T P S T R L S E D D E K R T R H D Q R R S G S C M S N Y C
 
AT3G50870.1     W D L I H T K N N N S K T A P Y N N V P S F S A N K P S R G C S G G G G G G G G G G G G D S L L A R R C A N C D T T S T
pt002821_POPTR_    W D I L Q T K N D S T P Y P P - - - - - - - Q A H K T S R G N N T C H G S N S N F A N N D P L L A R R C A N C D T T S T
 
AT3G50870.1     P L W R N G P R G P K S L C N A C G I R F K K E E R R T T A A T G - N T V V G A A P V Q T D Q Y G H H N S G Y N N Y H A
pt002821_POPTR_    P L W R N G P R G P K S L C N A C G I R F K K E E R R A T A A N A S N A N A N A S G G M E Q H Y G Y H - - - - - - - - -
 
AT3G50870.1     A T N N N N N N G T P W A H H H S T Q R V P C N Y P A N E I R F M D D Y G S G V A N N V E S D G A H G G V P F L S W R L
pt002821_POPTR_    - - - - Q N N S - - - W V Q N - - - Q K M P C F S P A N E F S F I E D - - - - - - N D R D S D T - - G N I P F L S W R L
 
AT3G50870.1     N V A D R A S - L V H D F T R -
pt002821_POPTR_    N V T D R P S Q L V H D F T R Y
 
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