fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G52440.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt044144 not found in 225aa AT3G52440.1 1st_1st 0.375745526 Ib
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G52440.1     MERAEALTSSFIWRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWT
pt044144_POPTR_ METG--------WK----EHAEISPSCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWT
                ** .        *:     :***:***************:********************

AT3G52440.1     KGGSLRNVPVGGGCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP
pt044144_POPTR_ EGGSLRNVPVGGGCRKNRRGKSM---RLSTDSSSSSMIPDGS--HIDLALVYAKFLNPQQ
                :***************.** **    . .*. ::.*  *.*.   ********:****: 

AT3G52440.1     DESILQENCDLATTDFLVDNPTGTSMDPS------WSMDINDGHHDHYINPVEHIVEECG
pt044144_POPTR_ DS---KKN-GLAGSLTISDFSTGVPLSDNDHLMYYYSLDSAHKHQDHQDRTQQCTSHETS
                *.   ::* .** :  : * .**..:. .      :*:*  . *:**  .. :   .* .

AT3G52440.1     YNGLPPFPGEELLSLDTNGVWSDALLIGHNHVDVGVTPVQAVHEPVVHFADESNDSTNLL
pt044144_POPTR_ SFHLPPLPGQDTVSQDI--LWSNSHMMDNHSLEMSPQPV---------LGPDTQDP-NLL
                   ***:**:: :* *   :**:: ::.:: :::.  **         :. :::*. ***

AT3G52440.1     FGSWSPFDFTADG-----
pt044144_POPTR_ FGNWSPFDMSSDDTFSRS
                **.*****:::*.
BoxShade v3.31 C (beta, 970507) Output
AT3G52440.1     M E R A E A L T S S F I W R P N A N A N A E I T P S C P R C G S S N T K F C Y Y N N Y S L T Q P R Y F C K G C R R Y W T
pt044144_POPTR_    M E T G - - - - - - - - W K - - - - E H A E I S P S C P R C G S S N T K F C Y H N N Y S L T Q P R Y F C K G C R R Y W T
 
AT3G52440.1     K G G S L R N V P V G G G C R K S R R P K S S S G N N T K T S L T A N S G N P G G G S P S I D L A L V Y A N F L N P K P
pt044144_POPTR_    E G G S L R N V P V G G G C R K N R R G K S M - - - R L S T D S S S S S M I P D G S - - H I D L A L V Y A K F L N P Q Q
 
AT3G52440.1     D E S I L Q E N C D L A T T D F L V D N P T G T S M D P S - - - - - - W S M D I N D G H H D H Y I N P V E H I V E E C G
pt044144_POPTR_    D S - - - K K N - G L A G S L T I S D F S T G V P L S D N D H L M Y Y Y S L D S A H K H Q D H Q D R T Q Q C T S H E T S
 
AT3G52440.1     Y N G L P P F P G E E L L S L D T N G V W S D A L L I G H N H V D V G V T P V Q A V H E P V V H F A D E S N D S T N L L
pt044144_POPTR_    S F H L P P L P G Q D T V S Q D I - - L W S N S H M M D N H S L E M S P Q P V - - - - - - - - - L G P D T Q D P - N L L
 
AT3G52440.1     F G S W S P F D F T A D G - - - - -
pt044144_POPTR_    F G N W S P F D M S S D D T F S R S
 
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