fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G52525.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027105 not found in 177aa AT2G36026.1 not_not 0.456928838 III
Gm007629 not found in 190aa AT2G36026.1 not_not 0.408239700 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G52525.1     MATKSKKKILKTVSVVDISCGNCIKPT-FASIFNFFSKKPKR-----------------P
gm027105_Glyma1 MSSSRKKLVLNTVS-VSLGCGSCRRPRLLRHIFH-PKQRPKK-----------------P
gm007629_Glyma0 MSGSRKKLLLNTVS-VKLGCGTCRRPS-LRRIFH-PKPKPKNLNNNTNYRKHKHSSSSSA
                *: . ** :*:*** *.:.**.* :*  :  **:  . :**.                 .

AT3G52525.1     SSTYRHCH--SSISSATPSSTPL-AT------------------------------ASVA
gm027105_Glyma1 AGQVHGLHWDDTTTSSTTTNASTAATFSPCYAEASAQFSDFAETAKAFG-------RGVA
gm007629_Glyma0 SSSFFASQWGGDSTSATPTNTNT--TFSP-YVD-SSHFSDSDSYVKAVGGLGRAGKEGVA
                :.     :  .  :*:*.:.:    *                               .**

AT3G52525.1     VEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWED
gm027105_Glyma1 VEKDSDDPYLDFRHSMLQMILENEIYSKEDLRELLNCFLQLNSPDHHGVIVRAFTEIWNG
gm007629_Glyma0 VEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIWNG
                *************:*********:****::*****:***.***  ***:*****:***:.

AT3G52525.1     VSSAAASAVEASPLITRHVSRASRDYYNYY
gm027105_Glyma1 VFSVRRRSGSST---GFHLNRKSRDF----
gm007629_Glyma0 VFSVRSSS---------HIHLKPREF----
                * *.   :         *:   .*::
BoxShade v3.31 C (beta, 970507) Output
AT3G52525.1     M A T K S K K K I L K T V S V V D I S C G N C I K P T - F A S I F N F F S K K P K R - - - - - - - - - - - - - - - - - P
gm027105_Glyma1    M S S S R K K L V L N T V S - V S L G C G S C R R P R L L R H I F H - P K Q R P K K - - - - - - - - - - - - - - - - - P
gm007629_Glyma0    M S G S R K K L L L N T V S - V K L G C G T C R R P S - L R R I F H - P K P K P K N L N N N T N Y R K H K H S S S S S A
 
AT3G52525.1     S S T Y R H C H - - S S I S S A T P S S T P L - A T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A S V A
gm027105_Glyma1    A G Q V H G L H W D D T T T S S T T T N A S T A A T F S P C Y A E A S A Q F S D F A E T A K A F G - - - - - - - R G V A
gm007629_Glyma0    S S S F F A S Q W G G D S T S A T P T N T N T - - T F S P - Y V D - S S H F S D S D S Y V K A V G G L G R A G K E G V A
 
AT3G52525.1     V E K D S D D P Y L D F R Q S M L Q M I L E N Q I Y S K D E L R E L L Q C F L S L N S H Y H H G I I V R A F S E I W E D
gm027105_Glyma1    V E K D S D D P Y L D F R H S M L Q M I L E N E I Y S K E D L R E L L N C F L Q L N S P D H H G V I V R A F T E I W N G
gm007629_Glyma0    V E K D S D D P Y L D F R H S M L Q M I L E N E I Y S K Q D L R E L L N C F L Q L N S P H H H G V I V R A F T E I W N G
 
AT3G52525.1     V S S A A A S A V E A S P L I T R H V S R A S R D Y Y N Y Y
gm027105_Glyma1    V F S V R R R S G S S T - - - G F H L N R K S R D F - - - -
gm007629_Glyma0    V F S V R S S S - - - - - - - - - H I H L K P R E F - - - -
 
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