fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G52525.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm004525 not found in 169aa AT2G36026.1 1st_not 0.464419475 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G52525.1     MATKSKKKILKTVSVVDISCGNCIKPTFASIFNFFSKKPKRPSSTYRHCH---SSISSAT
gm004525_Glyma0 MSSSRKKLVLNTVS-VSLGCGSCRRPGLLRHIFHPKRRPKKPAYQAHGFHWDDTATSSST
                *::. ** :*:*** *.:.**.* :* :   : . .::**:*:   :  *   :: **:*

AT3G52525.1     PSSTPLATAS----------------VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELR
gm004525_Glyma0 TNASTAATFSPCYAEASAQFSNYGRGVAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLR
                ..::. ** *                ***************:*********:*****:**

AT3G52525.1     ELLQCFLSLNSHYHHGIIVRAFSEIWEDVSSAAASAVEASPLITRHVSRASRDYYNYY
gm004525_Glyma0 ELLNCFLQLNSPDHHGVIVRAFTEIWNGVFSVRRSGSSTG----FHLNRKSRDF----
                ***:***.***  ***:*****:***:.* *.  *. .:.     *:.* ***:
BoxShade v3.31 C (beta, 970507) Output
AT3G52525.1     M A T K S K K K I L K T V S V V D I S C G N C I K P T F A S I F N F F S K K P K R P S S T Y R H C H - - - S S I S S A T
gm004525_Glyma0    M S S S R K K L V L N T V S - V S L G C G S C R R P G L L R H I F H P K R R P K K P A Y Q A H G F H W D D T A T S S S T
 
AT3G52525.1     P S S T P L A T A S - - - - - - - - - - - - - - - - V A V E K D S D D P Y L D F R Q S M L Q M I L E N Q I Y S K D E L R
gm004525_Glyma0    T N A S T A A T F S P C Y A E A S A Q F S N Y G R G V A V E K D S D D P Y L D F R H S M L Q M I L E N E I Y S K D D L R
 
AT3G52525.1     E L L Q C F L S L N S H Y H H G I I V R A F S E I W E D V S S A A A S A V E A S P L I T R H V S R A S R D Y Y N Y Y
gm004525_Glyma0    E L L N C F L Q L N S P D H H G V I V R A F T E I W N G V F S V R R S G S S T G - - - - F H L N R K S R D F - - - -
 
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