fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G53340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt043410 not found in 176aa AT3G53340.1 1st_1st 0.818548387 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G53340.1     MAESQTGGGGGGSHESGGDQSPRS-LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKE
pt043410_POPTR_ MAAEAPASPGGGSHES-GDQSPRSNSNVREQDRFLPIANISRIMKKALPANGKIAKDAKE
                ** . ... ******* *******  *******************:.** **********

AT3G53340.1     TMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREM
pt043410_POPTR_ TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREM
                *:**********:**************************************:** *****

AT3G53340.1     EGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYG--NSQGSNMMVQMPGTE
pt043410_POPTR_ EGDTKGSAKTGDTSAKKDIHPGPNAQIS---HQGSFSQGVSYGNSNSQAPHMMVPMQSNE
                *******.* *::***:* :*.  :*:*   :******* .**  ***..:*** * ..*
BoxShade v3.31 C (beta, 970507) Output
AT3G53340.1     M A E S Q T G G G G G G S H E S G G D Q S P R S - L N V R E Q D R F L P I A N I S R I M K R G L P L N G K I A K D A K E
pt043410_POPTR_    M A A E A P A S P G G G S H E S - G D Q S P R S N S N V R E Q D R F L P I A N I S R I M K K A L P A N G K I A K D A K E
 
AT3G53340.1     T M Q E C V S E F I S F V T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y I D P L K V Y L M R Y R E M
pt043410_POPTR_    T V Q E C V S E F I S F I T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y I D P L K I Y L S R Y R E M
 
AT3G53340.1     E G D T K G S G K G G E S S A K R D G Q P S Q V S Q F S Q V P Q Q G S F S Q G - P Y G - - N S Q G S N M M V Q M P G T E
pt043410_POPTR_    E G D T K G S A K T G D T S A K K D I H P G P N A Q I S - - - H Q G S F S Q G V S Y G N S N S Q A P H M M V P M Q S N E
 
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