fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G53340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052458 not found in 159aa AT3G53340.1 not_1st 0.774193548 II
Gm026833 not found in 162aa AT3G53340.1 not_1st 0.741935483 II
Gm007397 not found in 143aa AT3G53340.1 not_1st 0.447580645 II
Gm035400 not found in 126aa AT3G53340.1 not_1st 0.435483870 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G53340.1     MAE---SQTGGGGGGSHESGGDQSPRSLNVREQDRFL--------PIANISRIMKRGLPL
gm026833_Glyma1 MSDAPASPCGGGGGGSHES-GEHSPRS-NFREQDRFL--------PIANISRIMKKALPP
gm052458_Glyma1 MADGPASP----GGGSHES-GEHSPRS-NVREQDRYL--------PIANISRIMKKALPA
gm035400_Glyma1 MFNAPASPCGS-GRGNHES-SEHSPRS-YFREQDCFL--------PIANISCIMKKMLPS
gm007397_Glyma0 M-----------RLRVHQL--HHQRVSVFFFSSDSFLLRFSYLSSPAFNL----------
                *               *:   .:.  *  . ..* :*        *  *:          

AT3G53340.1     NGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
gm026833_Glyma1 NGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYIDPL
gm052458_Glyma1 NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
gm035400_Glyma1 NRKIAKDAKETLQECVSEFISFVTCEVSDKCQGEKRKTINDD---CTAICYGFEETTEP-
gm007397_Glyma0 -----------------KFLEF--CRASDKCQREKRKTINGDDLLWAMATLGFEDYMDPL
                                 :*:.*  ...***** *******.*    :    ***:  :* 

AT3G53340.1     KVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQG-------SFSQG-PYG
gm026833_Glyma1 KVYLAAYREIEGDSKGSAKGGDASAKRDVYQSPN---GQVAHQG-------SFSQGVNYT
gm052458_Glyma1 KIYLTRYREMEGDTKGSAKGGDSSSKKDVQPSPN---AQLAHQG-------SFSQGVSYT
gm035400_Glyma1 -------------------------------------SVCLSSGNCLLFFYSYKENIP--
gm007397_Glyma0 KIYLTRYREMEGDTKGSAKGGDSSAKRDVQPSPN---AQLAHQG-------SFSQNVTYP
                                                     .    .*       *:.:.    

AT3G53340.1     NSQGSNMMVQMPGTE
gm026833_Glyma1 NS-------------
gm052458_Glyma1 ISQ------------
gm035400_Glyma1 ---------------
gm007397_Glyma0 NSQGQHMMVPMQGPE
BoxShade v3.31 C (beta, 970507) Output
AT3G53340.1     M A E - - - S Q T G G G G G G S H E S G G D Q S P R S L N V R E Q D R F L - - - - - - - - P I A N I S R I M K R G L P L
gm026833_Glyma1    M S D A P A S P C G G G G G G S H E S - G E H S P R S - N F R E Q D R F L - - - - - - - - P I A N I S R I M K K A L P P
gm052458_Glyma1    M A D G P A S P - - - - G G G S H E S - G E H S P R S - N V R E Q D R Y L - - - - - - - - P I A N I S R I M K K A L P A
gm035400_Glyma1    M F N A P A S P C G S - G R G N H E S - S E H S P R S - Y F R E Q D C F L - - - - - - - - P I A N I S C I M K K M L P S
gm007397_Glyma0    M - - - - - - - - - - - R L R V H Q L - - H H Q R V S V F F F S S D S F L L R F S Y L S S P A F N L - - - - - - - - - -
 
AT3G53340.1     N G K I A K D A K E T M Q E C V S E F I S F V T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y I D P L
gm026833_Glyma1    N G K I A K D A K E T V Q E C V S E F I S F V T S E A S D K C Q R E K R K T I N G D D L L W A M T T L G F E E Y I D P L
gm052458_Glyma1    N G K I A K D A K E T V Q E C V S E F I S F I T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y I D P L
gm035400_Glyma1    N R K I A K D A K E T L Q E C V S E F I S F V T C E V S D K C Q G E K R K T I N D D - - - C T A I C Y G F E E T T E P -
gm007397_Glyma0    - - - - - - - - - - - - - - - - - K F L E F - - C R A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y M D P L
 
AT3G53340.1     K V Y L M R Y R E M E G D T K G S G K G G E S S A K R D G Q P S Q V S Q F S Q V P Q Q G - - - - - - - S F S Q G - P Y G
gm026833_Glyma1    K V Y L A A Y R E I E G D S K G S A K G G D A S A K R D V Y Q S P N - - - G Q V A H Q G - - - - - - - S F S Q G V N Y T
gm052458_Glyma1    K I Y L T R Y R E M E G D T K G S A K G G D S S S K K D V Q P S P N - - - A Q L A H Q G - - - - - - - S F S Q G V S Y T
gm035400_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S V C L S S G N C L L F F Y S Y K E N I P - -
gm007397_Glyma0    K I Y L T R Y R E M E G D T K G S A K G G D S S A K R D V Q P S P N - - - A Q L A H Q G - - - - - - - S F S Q N V T Y P
 
AT3G53340.1     N S Q G S N M M V Q M P G T E
gm026833_Glyma1    N S - - - - - - - - - - - - -
gm052458_Glyma1    I S Q - - - - - - - - - - - -
gm035400_Glyma1    - - - - - - - - - - - - - - -
gm007397_Glyma0    N S Q G Q H M M V P M Q G P E
 
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