fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G53340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm007396 not found in 171aa AT3G53340.1 1st_1st 0.822580645 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G53340.1     MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET
gm007396_Glyma0 MADG-PASPGGGSHES-GDHSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKET
                **:. ... ******* **:**** *******:***********:.** ***********

AT3G53340.1     MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME
gm007396_Glyma0 VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREME
                :**********:*********************************:****:** ******

AT3G53340.1     GDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYGNSQGSNMMVQMPGTE
gm007396_Glyma0 GDTKGSAKGGDSSAKRDVQPSPNAQLA---HQGSFSQNVTYPNSQGQHMMVPMQGPE
                ******.***:****** ***  :*::   :******. .* ****.:*** * *.*
BoxShade v3.31 C (beta, 970507) Output
AT3G53340.1     M A E S Q T G G G G G G S H E S G G D Q S P R S L N V R E Q D R F L P I A N I S R I M K R G L P L N G K I A K D A K E T
gm007396_Glyma0    M A D G - P A S P G G G S H E S - G D H S P R S - N V R E Q D R Y L P I A N I S R I M K K A L P A N G K I A K D A K E T
 
AT3G53340.1     M Q E C V S E F I S F V T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y I D P L K V Y L M R Y R E M E
gm007396_Glyma0    V Q E C V S E F I S F I T S E A S D K C Q R E K R K T I N G D D L L W A M A T L G F E D Y M D P L K I Y L T R Y R E M E
 
AT3G53340.1     G D T K G S G K G G E S S A K R D G Q P S Q V S Q F S Q V P Q Q G S F S Q G - P Y G N S Q G S N M M V Q M P G T E
gm007396_Glyma0    G D T K G S A K G G D S S A K R D V Q P S P N A Q L A - - - H Q G S F S Q N V T Y P N S Q G Q H M M V P M Q G P E
 
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