fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G53820.1 SADVIDLELRLGLDPY at 123/142 in AT3G53820.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt044643 ATSQAGLDLELRLGSE in 137/161 AT3G53820.1 1st_1st 0.325259515 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G53820.1     -----MNRKYLDRRSYS----WSGSQARPYICEFCERGFSNAQALGGHMNIHRKDRAKLR
pt044643_POPTR_ MDISLTTTGKSDQKACSSDDLQGSSHVRSYTCSFCKRGFTNAQALGGHMNIHRRDRAKLK
                      .    *::: *     ..*:.*.* *.**:***:*************:*****:

AT3G53820.1     QA--------NLKEEDSEDAI-------------CTTSRNRFGQELIELPFFVDTVGPRR
pt044643_POPTR_ QALDENFLSLNITKSTEETSSAPETPCAPSIEDDCATPRNKASEEFQQLPFIVDA----K
                **        *:.:. .* :              *:*.**: .:*: :***:**:    :

AT3G53820.1     KGEDDKSEKGLGDEEKKNMRILQKALSQSADVIDLELRLGLDPYKKTTSTST----
pt044643_POPTR_ VGTD-------GSEENK-MEFNQ-ATSQAG--LDLELRLGSEPHESSTRSSTRKFS
                 * *       *.**:* *.: * * **:.  :******* :*::.:* :**
BoxShade v3.31 C (beta, 970507) Output
AT3G53820.1     - - - - - M N R K Y L D R R S Y S - - - - W S G S Q A R P Y I C E F C E R G F S N A Q A L G G H M N I H R K D R A K L R
pt044643_POPTR_    M D I S L T T T G K S D Q K A C S S D D L Q G S S H V R S Y T C S F C K R G F T N A Q A L G G H M N I H R R D R A K L K
 
AT3G53820.1     Q A - - - - - - - - N L K E E D S E D A I - - - - - - - - - - - - - C T T S R N R F G Q E L I E L P F F V D T V G P R R
pt044643_POPTR_    Q A L D E N F L S L N I T K S T E E T S S A P E T P C A P S I E D D C A T P R N K A S E E F Q Q L P F I V D A - - - - K
 
AT3G53820.1     K G E D D K S E K G L G D E E K K N M R I L Q K A L S Q S A D V I D L E L R L G L D P Y K K T T S T S T - - - -
pt044643_POPTR_    V G T D - - - - - - - G S E E N K - M E F N Q - A T S Q A G - - L D L E L R L G S E P H E S S T R S S T R K F S
 
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