fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G54990.2 MLDLNLKIFSS at 0/346 in AT3G54990.1
GNGHNDLELSLGISSS at 269/346 in AT3G54990.1
MLDLNLKIFSS at 0/247 in AT3G54990.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035370 MLDLNLGISSS in 1/487 AT2G28550.1 not_not 0.405 III
GGSGHNLDLSLGISQP in 322/487
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G54990.2     MLDLNLKIFSSYN--EDQDRKVPLMI---STTGEEE--------------SNSSSSSTTD
pt035370_POPTR_ MLDLNLGISSSDSCCEDNNKNNMMVIVDVENHQEEEEAASRTQQMEDSATSNSSITNTTE
                ****** * ** .  **::::  ::*   ..  ***              **** :.**:

AT3G54990.2     -----SAARDAFIAFGILKRDDDLVPPPPPPPHKETG--------DLFP-----------
pt035370_POPTR_ DENSSNNSNSAFI-FDILKKDGNFTNTSAINASKETSRNCDFTTQQLFPESTGLELNFQP
                     . :..*** *.***:*.::. ...  . ***.        :***           

AT3G54990.2     --VVADARRNIEFSVEDSHWLNLSSLQ----------RNTQKMVKKSRRGPRSRSSQYRG
pt035370_POPTR_ GLAVASAAR--------PQWLKLSQMGSSPEAEPENVQQKQQQARKSRRGPRSRSSQYRG
                  .**.* *        .:**:**.:           ::.*: .:***************

AT3G54990.2     VTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRHD
pt035370_POPTR_ VTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNSSDYEED
                *****************************:***************:******  .**..*

AT3G54990.2     IDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKC-------TQF---KTHDQIHL-
pt035370_POPTR_ MKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAALE
                :.:****.* ***: ***:*:.*.******:*::*:**        **   *::*:  * 

AT3G54990.2     ------------------------------------------------------------
pt035370_POPTR_ FNGREAVTNFEPSVYKGDVISDPNNGGSGHNLDLSLGISQPSNDPKGNDSVGDSHCRYGG
                                                                            

AT3G54990.2     ------------------------------------------------------------
pt035370_POPTR_ CEIPRKERQVVEGSTAAAHMGLQTLHGSPMASKNLPAWSGIYPGLLSSYEERTTEKKVEA
                                                                            

AT3G54990.2     ----------------------------------------------FQNRYHFVRHVIF-
pt035370_POPTR_ VSSPRFSSWPWLINGSNNVVATMSQLSVAASSGFSSTITASSATLPFNQQNHFASNLRLA
                                                              *::: **. :: : 

AT3G54990.2     ----------------
pt035370_POPTR_ ASTTSSPNPSLYSYKR
BoxShade v3.31 C (beta, 970507) Output
AT3G54990.2     M L D L N L K I F S S Y N - - E D Q D R K V P L M I - - - S T T G E E E - - - - - - - - - - - - - - S N S S S S S T T D
pt035370_POPTR_    M L D L N L G I S S S D S C C E D N N K N N M M V I V D V E N H Q E E E E A A S R T Q Q M E D S A T S N S S I T N T T E
 
AT3G54990.2     - - - - - S A A R D A F I A F G I L K R D D D L V P P P P P P P H K E T G - - - - - - - - D L F P - - - - - - - - - - -
pt035370_POPTR_    D E N S S N N S N S A F I - F D I L K K D G N F T N T S A I N A S K E T S R N C D F T T Q Q L F P E S T G L E L N F Q P
 
AT3G54990.2     - - V V A D A R R N I E F S V E D S H W L N L S S L Q - - - - - - - - - - R N T Q K M V K K S R R G P R S R S S Q Y R G
pt035370_POPTR_    G L A V A S A A R - - - - - - - - P Q W L K L S Q M G S S P E A E P E N V Q Q K Q Q Q A R K S R R G P R S R S S Q Y R G
 
AT3G54990.2     V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A Y A A A R A Y D R A A I K F R G L D A D I N F V V D D Y R H D
pt035370_POPTR_    V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H A A A R A Y D R A A I K F R G V D A D I N F N S S D Y E E D
 
AT3G54990.2     I D K M K N L N K V E F V Q T L R R E S A S F G R G S S K Y K G L A L Q K C - - - - - - - T Q F - - - K T H D Q I H L -
pt035370_POPTR_    M K Q M K N L S K E E F V H I L R R Q S T G F S R G S S K Y R G V T L H K C G R W E A R M G Q F L G K K A Y D K A A L E
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035370_POPTR_    F N G R E A V T N F E P S V Y K G D V I S D P N N G G S G H N L D L S L G I S Q P S N D P K G N D S V G D S H C R Y G G
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035370_POPTR_    C E I P R K E R Q V V E G S T A A A H M G L Q T L H G S P M A S K N L P A W S G I Y P G L L S S Y E E R T T E K K V E A
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - F Q N R Y H F V R H V I F -
pt035370_POPTR_    V S S P R F S S W P W L I N G S N N V V A T M S Q L S V A A S S G F S S T I T A S S A T L P F N Q Q N H F A S N L R L A
 
AT3G54990.2     - - - - - - - - - - - - - - - -
pt035370_POPTR_    A S T T S S P N P S L Y S Y K R
 
0