fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G54990.2 MLDLNLKIFSS at 0/346 in AT3G54990.1
GNGHNDLELSLGISSS at 269/346 in AT3G54990.1
MLDLNLKIFSS at 0/247 in AT3G54990.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt043227 MLDLNLGITYS in 1/506 AT4G36920.1 1st_not 0.41 II
GGSGHNLDLSLGISQP in 338/506
Pt035370 MLDLNLGISSS in 1/487 AT2G28550.1 not_not 0.405 III
GGSGHNLDLSLGISQP in 322/487
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G54990.2     MLDLNLKIFSSYN--EDQDRKVPLMIS-----TTGEEE-------------SNSSSSSTT
pt043227_POPTR_ MLDLNLGITYSDSSCDDNNKNGMMVIVDVENHHHQEEEEASRTRQMEDSAASNSSTINTT
pt035370_POPTR_ MLDLNLGISSSDSCCEDNNKNNMMVIVDVEN-HQEEEEAASRTQQMEDSATSNSSITNTT
                ****** *  * .  :*::::  ::*         ***             ****  .**

AT3G54990.2     D-----SAARDAFIAFGILKRDDDLVPPPPPPPHKETG--------DLFPVVADARRNIE
pt043227_POPTR_ EDENSSNNSNSAFI-FDILKKDENFTSTTTIDASKQTNPNCDFTTQQLSP----QRSGLE
pt035370_POPTR_ EDENSSNNSNSAFI-FDILKKDGNFTNTSAINASKETSRNCDFTTQQLFP----ESTGLE
                :     . :..*** *.***:* ::. ...  . *:*.        :* *       .:*

AT3G54990.2     FSVEDS---------HWLNLSSLQ----------RNTQKMVKKSRRGPRSRSSQYRGVTF
pt043227_POPTR_ FNLQPGLAGTTATRPQWLKLSQMGSSGEAELRIVQQKQQQARKSRRGPRSRSSQYRGVTF
pt035370_POPTR_ LNFQPGLAVASAARPQWLKLSQMGSSPEAEPENVQQKQQQARKSRRGPRSRSSQYRGVTF
                :..: .         :**:**.:           ::.*: .:******************

AT3G54990.2     YRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRHDIDK
pt043227_POPTR_ YRRTGRWESHIWDCGKQVYLGGFDTAHTAARAYDRAAIKFRGVDADINFNLSDYEEDMKQ
pt035370_POPTR_ YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNSSDYEEDMKQ
                **************************::**************:******  .**..*:.:

AT3G54990.2     MKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCTQFK---------------------
pt043227_POPTR_ MKNLNKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV
pt035370_POPTR_ MKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK-----------
                ****.* ***: ***:*:.*.******:*::*:** :::                     

AT3G54990.2     ----THDQIHL-------------------------------------------------
pt043227_POPTR_ EAARAYDKAALNCNGREAVTNFEPSVYKGDTVFDTNYGGSGHNLDLSLGISQPTNDPKGN
pt035370_POPTR_ ----AYDKAALEFNGREAVTNFEPSVYKGDVISDPNNGGSGHNLDLSLGISQPSNDPKGN
                    ::*:  *                                                 

AT3G54990.2     ------------------------------------------------------------
pt043227_POPTR_ DNLGDGHCSFGGCEIPIKERQAKAEGTAAARMGLETLHGLPIASRNLPTWSGMFPGLASS
pt035370_POPTR_ DSVGDSHCRYGGCEIPRKERQVVEGSTAAAHMGLQTLHGSPMASKNLPAWSGIYPGLLSS
                                                                            

AT3G54990.2     -----------------------------------------------------------F
pt043227_POPTR_ YEERTPEKRFEAVSPPRFSSWPWQINGSNSVAATMPQLCVAASSGFSSSTKTVPSATLPF
pt035370_POPTR_ YEERTTEKKVEAVSSPRFSSWPWLINGSNNVVATMSQLSVAASSGF-SSTITASSATLPF
                                                                           *

AT3G54990.2     QNRYHFV----RHVIF---------------
pt043227_POPTR_ NQQNHFANNNPRLAAFTTSATNPSFYYSYTS
pt035370_POPTR_ NQQNHFA-SNLRLAASTTSSPNPSL-YSYKR
                ::: **.    * .
BoxShade v3.31 C (beta, 970507) Output
AT3G54990.2     M L D L N L K I F S S Y N - - E D Q D R K V P L M I S - - - - - T T G E E E - - - - - - - - - - - - - S N S S S S S T T
pt043227_POPTR_    M L D L N L G I T Y S D S S C D D N N K N G M M V I V D V E N H H H Q E E E E A S R T R Q M E D S A A S N S S T I N T T
pt035370_POPTR_    M L D L N L G I S S S D S C C E D N N K N N M M V I V D V E N - H Q E E E E A A S R T Q Q M E D S A T S N S S I T N T T
 
AT3G54990.2     D - - - - - S A A R D A F I A F G I L K R D D D L V P P P P P P P H K E T G - - - - - - - - D L F P V V A D A R R N I E
pt043227_POPTR_    E D E N S S N N S N S A F I - F D I L K K D E N F T S T T T I D A S K Q T N P N C D F T T Q Q L S P - - - - Q R S G L E
pt035370_POPTR_    E D E N S S N N S N S A F I - F D I L K K D G N F T N T S A I N A S K E T S R N C D F T T Q Q L F P - - - - E S T G L E
 
AT3G54990.2     F S V E D S - - - - - - - - - H W L N L S S L Q - - - - - - - - - - R N T Q K M V K K S R R G P R S R S S Q Y R G V T F
pt043227_POPTR_    F N L Q P G L A G T T A T R P Q W L K L S Q M G S S G E A E L R I V Q Q K Q Q Q A R K S R R G P R S R S S Q Y R G V T F
pt035370_POPTR_    L N F Q P G L A V A S A A R P Q W L K L S Q M G S S P E A E P E N V Q Q K Q Q Q A R K S R R G P R S R S S Q Y R G V T F
 
AT3G54990.2     Y R R T G R W E S H I W D C G K Q V Y L G G F D T A Y A A A R A Y D R A A I K F R G L D A D I N F V V D D Y R H D I D K
pt043227_POPTR_    Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H T A A R A Y D R A A I K F R G V D A D I N F N L S D Y E E D M K Q
pt035370_POPTR_    Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H A A A R A Y D R A A I K F R G V D A D I N F N S S D Y E E D M K Q
 
AT3G54990.2     M K N L N K V E F V Q T L R R E S A S F G R G S S K Y K G L A L Q K C T Q F K - - - - - - - - - - - - - - - - - - - - -
pt043227_POPTR_    M K N L N K E E F V H I L R R Q S T G F S R G S S K Y R G V T L H K C G R W E A R M G Q F L G K K Y I Y L G L F D S E V
pt035370_POPTR_    M K N L S K E E F V H I L R R Q S T G F S R G S S K Y R G V T L H K C G R W E A R M G Q F L G K K - - - - - - - - - - -
 
AT3G54990.2     - - - - T H D Q I H L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt043227_POPTR_    E A A R A Y D K A A L N C N G R E A V T N F E P S V Y K G D T V F D T N Y G G S G H N L D L S L G I S Q P T N D P K G N
pt035370_POPTR_    - - - - A Y D K A A L E F N G R E A V T N F E P S V Y K G D V I S D P N N G G S G H N L D L S L G I S Q P S N D P K G N
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt043227_POPTR_    D N L G D G H C S F G G C E I P I K E R Q A K A E G T A A A R M G L E T L H G L P I A S R N L P T W S G M F P G L A S S
pt035370_POPTR_    D S V G D S H C R Y G G C E I P R K E R Q V V E G S T A A A H M G L Q T L H G S P M A S K N L P A W S G I Y P G L L S S
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - F
pt043227_POPTR_    Y E E R T P E K R F E A V S P P R F S S W P W Q I N G S N S V A A T M P Q L C V A A S S G F S S S T K T V P S A T L P F
pt035370_POPTR_    Y E E R T T E K K V E A V S S P R F S S W P W L I N G S N N V V A T M S Q L S V A A S S G F - S S T I T A S S A T L P F
 
AT3G54990.2     Q N R Y H F V - - - - R H V I F - - - - - - - - - - - - - - -
pt043227_POPTR_    N Q Q N H F A N N N P R L A A F T T S A T N P S F Y Y S Y T S
pt035370_POPTR_    N Q Q N H F A - S N L R L A A S T T S S P N P S L - Y S Y K R
 
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