fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G54990.2 MLDLNLKIFSS at 0/346 in AT3G54990.1
GNGHNDLELSLGISSS at 269/346 in AT3G54990.1
MLDLNLKIFSS at 0/247 in AT3G54990.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041160 MLDLNLNAEST in 1/388 AT2G28550.2 not_not 0.4025 III
EGGSHDLDLNLGIATP in 306/388
Gm041159 MLDLNLNAEST in 1/485 AT2G28550.1 not_not 0.4025 III
EGGSHDLDLNLGIATP in 306/485
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G54990.2     MLDLNLKIFSSYNEDQ----DRKVPLMISTTGEEESNSSSSSTTDSA---ARDAF-IAFG
gm041160_Glyma1 MLDLNLNAESTQNNESLVLLDKFPEASLGTSNSSVVNAEGSSNEDSCSTRAGDVFAFSFG
gm041159_Glyma1 MLDLNLNAESTQNNESLVLLDKFPEASLGTSNSSVVNAEGSSNEDSCSTRAGDVFAFSFG
                ******:  *: *::.    *:     :.*:...  *:..**. **.   * *.* ::**

AT3G54990.2     ILKRD--DDLVPPPPPPPHKETGDLFPVVAD------------ARRNIEFSVEDSHWLNL
gm041160_Glyma1 ILKVEGANEVVA-------TATKELFPVSSENWQGQSSTSSSQARKNLMDLPLDHQNGEV
gm041159_Glyma1 ILKVEGANEVVA-------TATKELFPVSSENWQGQSSTSSSQARKNLMDLPLDHQNGEV
                *** :  :::*.       . * :**** ::            **:*:     * :  ::

AT3G54990.2     SSLQRNTQKMVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAA
gm041160_Glyma1 KVVQVQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHIAA
gm041159_Glyma1 KVVQVQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHIAA
                . :* :.*  **********************************************: **

AT3G54990.2     RAYDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGL
gm041160_Glyma1 RAYDRAAIKFRGLDADINFDLVDYEEDLKQMKNLSKQEFVHILRRHSTGFSRGSSKYRGV
gm041159_Glyma1 RAYDRAAIKFRGLDADINFDLVDYEEDLKQMKNLSKQEFVHILRRHSTGFSRGSSKYRGV
                ******************* : **..*:.:****.* ***: ***.*:.*.******:*:

AT3G54990.2     ALQKC-------TQF--KTHDQIHLF----------------------------------
gm041160_Glyma1 TLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNRREAVTNFEPSIYESE
gm041159_Glyma1 TLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNRREAVTNFEPSIYESE
                :*:**        **  *.:  : **                                  

AT3G54990.2     ----------------------------QNRYHF--------------------VRHVI-
gm041160_Glyma1 MKPEAINEGGSHDLDLNLGIATPGHGPKENRGHLQFQSIPYNMHPGRSSRMETNVNSVIG
gm041159_Glyma1 MKPEAINEGGSHDLDLNLGIATPGHGPKENRGHLQFQSIPYNMHPGRSSRMETNVNSVIG
                                            :** *:                    *. ** 

AT3G54990.2     ------------------------------------------------------------
gm041160_Glyma1 DPSLKRLVVTEERPSVYSTFFPNLNKEERL------------------------------
gm041159_Glyma1 DPSLKRLVVTEERPSVYSTFFPNLERAERMGIDPSKGVPNWAWQTNGQVNATPVPPFSTA
                                                                            

AT3G54990.2     ----------------------------F-------------------------------
gm041160_Glyma1 ----------------------------LLILT---------------------------
gm041159_Glyma1 ASSGFSISATFPSTAIFPTKSMNPIPQSFCITSHSTPGSNAPQFYYEVKSSQAPSQPLSC
                                            :                               

AT3G54990.2     ------------
gm041160_Glyma1 ------------
gm041159_Glyma1 NTSINGSPPHKF
BoxShade v3.31 C (beta, 970507) Output
AT3G54990.2     M L D L N L K I F S S Y N E D Q - - - - D R K V P L M I S T T G E E E S N S S S S S T T D S A - - - A R D A F - I A F G
gm041160_Glyma1    M L D L N L N A E S T Q N N E S L V L L D K F P E A S L G T S N S S V V N A E G S S N E D S C S T R A G D V F A F S F G
gm041159_Glyma1    M L D L N L N A E S T Q N N E S L V L L D K F P E A S L G T S N S S V V N A E G S S N E D S C S T R A G D V F A F S F G
 
AT3G54990.2     I L K R D - - D D L V P P P P P P P H K E T G D L F P V V A D - - - - - - - - - - - - A R R N I E F S V E D S H W L N L
gm041160_Glyma1    I L K V E G A N E V V A - - - - - - - T A T K E L F P V S S E N W Q G Q S S T S S S Q A R K N L M D L P L D H Q N G E V
gm041159_Glyma1    I L K V E G A N E V V A - - - - - - - T A T K E L F P V S S E N W Q G Q S S T S S S Q A R K N L M D L P L D H Q N G E V
 
AT3G54990.2     S S L Q R N T Q K M V K K S R R G P R S R S S Q Y R G V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A Y A A A
gm041160_Glyma1    K V V Q V Q P Q P Q V K K S R R G P R S R S S Q Y R G V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H I A A
gm041159_Glyma1    K V V Q V Q P Q P Q V K K S R R G P R S R S S Q Y R G V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H I A A
 
AT3G54990.2     R A Y D R A A I K F R G L D A D I N F V V D D Y R H D I D K M K N L N K V E F V Q T L R R E S A S F G R G S S K Y K G L
gm041160_Glyma1    R A Y D R A A I K F R G L D A D I N F D L V D Y E E D L K Q M K N L S K Q E F V H I L R R H S T G F S R G S S K Y R G V
gm041159_Glyma1    R A Y D R A A I K F R G L D A D I N F D L V D Y E E D L K Q M K N L S K Q E F V H I L R R H S T G F S R G S S K Y R G V
 
AT3G54990.2     A L Q K C - - - - - - - T Q F - - K T H D Q I H L F - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm041160_Glyma1    T L H K C G R W E A R M G Q F L G K K Y I Y L G L F D S E V E A A R A Y D K A A I K C N R R E A V T N F E P S I Y E S E
gm041159_Glyma1    T L H K C G R W E A R M G Q F L G K K Y I Y L G L F D S E V E A A R A Y D K A A I K C N R R E A V T N F E P S I Y E S E
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - Q N R Y H F - - - - - - - - - - - - - - - - - - - - V R H V I -
gm041160_Glyma1    M K P E A I N E G G S H D L D L N L G I A T P G H G P K E N R G H L Q F Q S I P Y N M H P G R S S R M E T N V N S V I G
gm041159_Glyma1    M K P E A I N E G G S H D L D L N L G I A T P G H G P K E N R G H L Q F Q S I P Y N M H P G R S S R M E T N V N S V I G
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm041160_Glyma1    D P S L K R L V V T E E R P S V Y S T F F P N L N K E E R L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm041159_Glyma1    D P S L K R L V V T E E R P S V Y S T F F P N L E R A E R M G I D P S K G V P N W A W Q T N G Q V N A T P V P P F S T A
 
AT3G54990.2     - - - - - - - - - - - - - - - - - - - - - - - - - - - - F - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm041160_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - L L I L T - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm041159_Glyma1    A S S G F S I S A T F P S T A I F P T K S M N P I P Q S F C I T S H S T P G S N A P Q F Y Y E V K S S Q A P S Q P L S C
 
AT3G54990.2     - - - - - - - - - - - -
gm041160_Glyma1    - - - - - - - - - - - -
gm041159_Glyma1    N T S I N G S P P H K F
 
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