fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G55560.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042069 not found in 336aa AT3G04570.1 not_not 0.449308755 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G55560.1     MANPWWVGNVAIGGVESPVTSSAPSLHHRN-SNNNNPPTMTRSDPRLDHDFTTNNSGSPN
pt042069_POPTR_ MANRWWAGNVAMSGGD-PV-SSIPSLHLRNLEEESTPPGSNRLGPRREQNFIDTNTNSPK
                *** **.****:.* : ** ** **** ** .::..**  .* .** :::*  .*:.**:

AT3G55560.1     T-------------QTQSQEEQ-NSRDEQPAVEPGS---------GSGSTGRRPRGRPPG
pt042069_POPTR_ TTTTTTATAPSAQNQSQNREEQEDSRDNTNNQESGDHIAHETIEPGSGSTSRRPRGRPAG
                *             *:*.:*** :***:    *.*.         *****.*******.*

AT3G55560.1     SKNKPKSPVVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVT
pt042069_POPTR_ SKNKPKPPVVITKESPNSLRSHVLEISSGSDIVDSIANFSHRRHHGVSILSGSGIVDNVT
                ******.***:********:******::*:*:.:*:  *::** :***:*****:* ***

AT3G55560.1     LRQPAASGGVVSLRGQFEILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLI
pt042069_POPTR_ LRQPAAPGGVITLHGRFEILSLSGSFLPAP-SPPGATRLTVYLAGAQGQVVGGTVMGELV
                ******.***::*:*:*****:.*:***:. **..*: **:************ * * *:

AT3G55560.1     ASGPVIVIAATFCNATYERLPIEEEQQQEQPLQLEDGKKQKEENDDNESGNNGNEGSMQP
pt042069_POPTR_ AAGPVMVIAATFSNATYERLPLEEQEQEG--MQLQQQVDSSGTNNGNAAAGGGNNSGTQS
                *:***:******.********:**::*:   :**::  ...  *:.* :...**:.. *.

AT3G55560.1     ----------PMYNMPPNFIPNGHQMAQHDVYWGGPPPRAPPSY
pt042069_POPTR_ SQGLGEHGSIPVFNLPPNLLPNG-QMP-HDVFW-GPPPRPPPSY
                          *::*:***::*** **. ***:* *****.****
BoxShade v3.31 C (beta, 970507) Output
AT3G55560.1     M A N P W W V G N V A I G G V E S P V T S S A P S L H H R N - S N N N N P P T M T R S D P R L D H D F T T N N S G S P N
pt042069_POPTR_    M A N R W W A G N V A M S G G D - P V - S S I P S L H L R N L E E E S T P P G S N R L G P R R E Q N F I D T N T N S P K
 
AT3G55560.1     T - - - - - - - - - - - - - Q T Q S Q E E Q - N S R D E Q P A V E P G S - - - - - - - - - G S G S T G R R P R G R P P G
pt042069_POPTR_    T T T T T T A T A P S A Q N Q S Q N R E E Q E D S R D N T N N Q E S G D H I A H E T I E P G S G S T S R R P R G R P A G
 
AT3G55560.1     S K N K P K S P V V V T K E S P N S L Q S H V L E I A T G A D V A E S L N A F A R R R G R G V S V L S G S G L V T N V T
pt042069_POPTR_    S K N K P K P P V V I T K E S P N S L R S H V L E I S S G S D I V D S I A N F S H R R H H G V S I L S G S G I V D N V T
 
AT3G55560.1     L R Q P A A S G G V V S L R G Q F E I L S M C G A F L P T S G S P A A A A G L T I Y L A G A Q G Q V V G G G V A G P L I
pt042069_POPTR_    L R Q P A A P G G V I T L H G R F E I L S L S G S F L P A P - S P P G A T R L T V Y L A G A Q G Q V V G G T V M G E L V
 
AT3G55560.1     A S G P V I V I A A T F C N A T Y E R L P I E E E Q Q Q E Q P L Q L E D G K K Q K E E N D D N E S G N N G N E G S M Q P
pt042069_POPTR_    A A G P V M V I A A T F S N A T Y E R L P L E E Q E Q E G - - M Q L Q Q Q V D S S G T N N G N A A A G G G N N S G T Q S
 
AT3G55560.1     - - - - - - - - - - P M Y N M P P N F I P N G H Q M A Q H D V Y W G G P P P R A P P S Y
pt042069_POPTR_    S Q G L G E H G S I P V F N L P P N L L P N G - Q M P - H D V F W - G P P P R P P P S Y
 
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