fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G55560.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048588 not found in 302aa AT3G55560.1 1st_1st 0.447004608 Ia
Pt035739 not found in 336aa AT3G55560.1 1st_1st 0.472350230 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G55560.1     MANPWWVGNVAIGGVESPVTSSAPSLHHRN-SNNNNPPTMTRSDPRLDHDF----TTNNS
gm048588_Glyma1 MANRWWAGNVGM---------------------------------IREQELMENSNNNNN
pt035739_POPTR_ MANRWWAGNVAMRGVD-PVSSS-PSLHLGNLEEDSTPPGLNRLGPRREQDF----TDTNT
                *** **.***.:                                   ::::    . .*.

AT3G55560.1     GSPNTQTQSQ----------------EEQNSRDEQ-------------PAVEPGSGSGST
gm048588_Glyma1 NNNATTTTPTNSSNSNTNANTNTNTTEEEVSRDNGEDQNQNLGSH---EGSEP----GSS
pt035739_POPTR_ SSPKTTTTATPPSTQNQE--------EHEDSRDN--TNNQESGDHTALETIEPG--SGST
                ..  * * .                 *.: ***:                 **    **:

AT3G55560.1     GRRPRGRPPGSKNKPKSPVVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVL
gm048588_Glyma1 GRRPRGRPAGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVL
pt035739_POPTR_ SRRPRGRPAGSKNKPKPPIVITKESPNSLHSHVLEISSGSDIVESIATFSHRRHRGVSIL
                .*******.*******.*:*:******:*:******::*:*:.**: :*:.** ****:*

AT3G55560.1     SGSGLVTNVTLRQPAASGGVVSLRGQFEILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQV
gm048588_Glyma1 SGSGIVANVTLRQPAAPAGVITLHGRFEILSLSGAFLP-SPSPSGATGLTVYLAGGQGQV
pt035739_POPTR_ SGSGIVNNVTLRQPAAPGGVITLHGRFEILSLSGSFLP-APSPPGATGLTVYLAGGQGQV
                ****:* *********..**::*:*:*****:.*:*** : **..*:***:****.****

AT3G55560.1     VGGGVAGPLIASGPVIVIAATFCNATYERLPIEEEQQQEQPLQLEDGKKQKEENDDNES-
gm048588_Glyma1 VGGNVAGSLVASGPVMVIAATFANATYERLPLEDDQGEEE-MQVQQQQQQQQQQQ-----
pt035739_POPTR_ VGGTVMGELIAAGPVMVIAATFSNATYERLPLE-EQEQEG-MQLQQQVNSPGTNNGNAAA
                *** * * *:*:***:******.********:* :* :*  :*:::  :.   ::     

AT3G55560.1     --------GNNGNEGSMQP-------PMYNMPPNFIPNGHQMAQHDVYWGGPPPRAPPSY
gm048588_Glyma1 ---------QQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQNMP-HDVFW-GAPPRPPPSF
pt035739_POPTR_ GGGASSGGGNNSVTQSSQGLGEHVSIPGYNLPPNLLPNGQ-VP-HDMFW-CPPPRPPPSY
                         ::    . *        * **:***:: **: :. **::*  .***.***:
BoxShade v3.31 C (beta, 970507) Output
AT3G55560.1     M A N P W W V G N V A I G G V E S P V T S S A P S L H H R N - S N N N N P P T M T R S D P R L D H D F - - - - T T N N S
gm048588_Glyma1    M A N R W W A G N V G M - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - I R E Q E L M E N S N N N N N
pt035739_POPTR_    M A N R W W A G N V A M R G V D - P V S S S - P S L H L G N L E E D S T P P G L N R L G P R R E Q D F - - - - T D T N T
 
AT3G55560.1     G S P N T Q T Q S Q - - - - - - - - - - - - - - - - E E Q N S R D E Q - - - - - - - - - - - - - P A V E P G S G S G S T
gm048588_Glyma1    N N N A T T T T P T N S S N S N T N A N T N T N T T E E E V S R D N G E D Q N Q N L G S H - - - E G S E P - - - - G S S
pt035739_POPTR_    S S P K T T T T A T P P S T Q N Q E - - - - - - - - E H E D S R D N - - T N N Q E S G D H T A L E T I E P G - - S G S T
 
AT3G55560.1     G R R P R G R P P G S K N K P K S P V V V T K E S P N S L Q S H V L E I A T G A D V A E S L N A F A R R R G R G V S V L
gm048588_Glyma1    G R R P R G R P A G S K N K P K P P I V I T K E S P N A L R S H V L E I A S G S D V A E S I A A F A N R R H R G V S V L
pt035739_POPTR_    S R R P R G R P A G S K N K P K P P I V I T K E S P N S L H S H V L E I S S G S D I V E S I A T F S H R R H R G V S I L
 
AT3G55560.1     S G S G L V T N V T L R Q P A A S G G V V S L R G Q F E I L S M C G A F L P T S G S P A A A A G L T I Y L A G A Q G Q V
gm048588_Glyma1    S G S G I V A N V T L R Q P A A P A G V I T L H G R F E I L S L S G A F L P - S P S P S G A T G L T V Y L A G G Q G Q V
pt035739_POPTR_    S G S G I V N N V T L R Q P A A P G G V I T L H G R F E I L S L S G S F L P - A P S P P G A T G L T V Y L A G G Q G Q V
 
AT3G55560.1     V G G G V A G P L I A S G P V I V I A A T F C N A T Y E R L P I E E E Q Q Q E Q P L Q L E D G K K Q K E E N D D N E S -
gm048588_Glyma1    V G G N V A G S L V A S G P V M V I A A T F A N A T Y E R L P L E D D Q G E E E - M Q V Q Q Q Q Q Q Q Q Q Q Q - - - - -
pt035739_POPTR_    V G G T V M G E L I A A G P V M V I A A T F S N A T Y E R L P L E - E Q E Q E G - M Q L Q Q Q V N S P G T N N G N A A A
 
AT3G55560.1     - - - - - - - - G N N G N E G S M Q P - - - - - - - P M Y N M P P N F I P N G H Q M A Q H D V Y W G G P P P R A P P S Y
gm048588_Glyma1    - - - - - - - - - Q Q Q Q Q Q Q S Q G L G E Q V S M P M Y N L P P N L L H N G Q N M P - H D V F W - G A P P R P P P S F
pt035739_POPTR_    G G G A S S G G G N N S V T Q S S Q G L G E H V S I P G Y N L P P N L L P N G Q - V P - H D M F W - C P P P R P P P S Y
 
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