fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G55560.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048588 not found in 302aa AT3G55560.1 1st_1st 0.447004608 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G55560.1     MANPWWVGNVAIGGVESPVTSSAPSLHHRNSNNNNPPTMTRSDPRLDHDFTTNNSGSPNT
gm048588_Glyma1 MANRWWAGNVGMIREQELMENS-----NNNNNNNNATTTTPTN-------SSNSNTNANT
                *** **.***.:   :. : .*     :.*.****..* * ::       ::*.. ..**

AT3G55560.1     QTQSQEEQNSRD------EQPAVEPGSGSGSTGRRPRGRPPGSKNKPKSPVVVTKESPNS
gm048588_Glyma1 NTNTTEEEVSRDNGEDQNQNLGSHEGSEPGSSGRRPRGRPAGSKNKPKPPIVITKESPNA
                :*:: **: ***      :: . . ** .**:********.*******.*:*:******:

AT3G55560.1     LQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASGGVVSLRGQFE
gm048588_Glyma1 LRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVANVTLRQPAAPAGVITLHGRFE
                *:*******:*:*****: ***.** **********:*:*********..**::*:*:**

AT3G55560.1     ILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLIASGPVIVIAATFCNATYE
gm048588_Glyma1 ILSLSGAFLP-SPSPSGATGLTVYLAGGQGQVVGGNVAGSLVASGPVMVIAATFANATYE
                ***:.***** * **:.*:***:****.*******.***.*:*****:******.*****

AT3G55560.1     RLPIEEEQQQEQ---PLQLEDGKKQKEENDDNESGNNGNEGSMQPPMYNMPPNFIPNGHQ
gm048588_Glyma1 RLPLEDDQGEEEMQVQQQQQQQQQQQQQQQQQQSQGLGEQVSM--PMYNLPPNLLHNGQN
                ***:*::* :*:     * :: ::*::::::::* . *:: **  ****:***:: **::

AT3G55560.1     MAQHDVYWGGPPPRAPPSY
gm048588_Glyma1 MP-HDVFWGA-PPRPPPSF
                *. ***:**. ***.***:
BoxShade v3.31 C (beta, 970507) Output
AT3G55560.1     M A N P W W V G N V A I G G V E S P V T S S A P S L H H R N S N N N N P P T M T R S D P R L D H D F T T N N S G S P N T
gm048588_Glyma1    M A N R W W A G N V G M I R E Q E L M E N S - - - - - N N N N N N N N A T T T T P T N - - - - - - - S S N S N T N A N T
 
AT3G55560.1     Q T Q S Q E E Q N S R D - - - - - - E Q P A V E P G S G S G S T G R R P R G R P P G S K N K P K S P V V V T K E S P N S
gm048588_Glyma1    N T N T T E E E V S R D N G E D Q N Q N L G S H E G S E P G S S G R R P R G R P A G S K N K P K P P I V I T K E S P N A
 
AT3G55560.1     L Q S H V L E I A T G A D V A E S L N A F A R R R G R G V S V L S G S G L V T N V T L R Q P A A S G G V V S L R G Q F E
gm048588_Glyma1    L R S H V L E I A S G S D V A E S I A A F A N R R H R G V S V L S G S G I V A N V T L R Q P A A P A G V I T L H G R F E
 
AT3G55560.1     I L S M C G A F L P T S G S P A A A A G L T I Y L A G A Q G Q V V G G G V A G P L I A S G P V I V I A A T F C N A T Y E
gm048588_Glyma1    I L S L S G A F L P - S P S P S G A T G L T V Y L A G G Q G Q V V G G N V A G S L V A S G P V M V I A A T F A N A T Y E
 
AT3G55560.1     R L P I E E E Q Q Q E Q - - - P L Q L E D G K K Q K E E N D D N E S G N N G N E G S M Q P P M Y N M P P N F I P N G H Q
gm048588_Glyma1    R L P L E D D Q G E E E M Q V Q Q Q Q Q Q Q Q Q Q Q Q Q Q Q Q Q Q S Q G L G E Q V S M - - P M Y N L P P N L L H N G Q N
 
AT3G55560.1     M A Q H D V Y W G G P P P R A P P S Y
gm048588_Glyma1    M P - H D V F W G A - P P R P P P S F
 
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