fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G56220.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb006945 not found in 170aa AT2G40435.1 not_not 0.424836601 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G56220.1     MVSREHKR--GSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKINNATTSE
Sb006945_Sorbi1 -MSWEQRKKAAAALHEKLQILRSITHSRALSDASIIMDASEYIKELKQKVVRLKQEMACE
                 :* *:::  .::*:**:::*****.*:* *::***:***:***:***** ::::  :.*

AT3G56220.1     QS------FRESSDPNPMVTVETL----EKGFMIKVMSRKNEAGMLVCVLETFEDLGLDV
Sb006945_Sorbi1 EAEAAGALLKHSSSPSPVVTVETLAGAGKHGFLINVLSDKSCPGLLVSILEAFDELGLSV
                ::      ::.**.*.*:******    ::**:*:*:* *. .*:**.:**:*::***.*

AT3G56220.1     VEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDSHA-----
Sb006945_Sorbi1 LQATASCADTFRLEAVGGENQVDN--VDEHVVKQAVLQAMRTCSSQGCRQQQE
                ::* .**:*** *.*:*..*: *.  :* ..***** :*:** *.. .
BoxShade v3.31 C (beta, 970507) Output
AT3G56220.1     M V S R E H K R - - G S S L R E K F H L L R S I T D S H A E S E T S I I V D A S K Y I K K L K Q K V E K I N N A T T S E
Sb006945_Sorbi1    - M S W E Q R K K A A A A L H E K L Q I L R S I T H S R A L S D A S I I M D A S E Y I K E L K Q K V V R L K Q E M A C E
 
AT3G56220.1     Q S - - - - - - F R E S S D P N P M V T V E T L - - - - E K G F M I K V M S R K N E A G M L V C V L E T F E D L G L D V
Sb006945_Sorbi1    E A E A A G A L L K H S S S P S P V V T V E T L A G A G K H G F L I N V L S D K S C P G L L V S I L E A F D E L G L S V
 
AT3G56220.1     V E A R V S C T D T F S L H A I G S S N N D D G D C I D A E A V K Q A V A E A I R T W S D S H A - - - - -
Sb006945_Sorbi1    L Q A T A S C A D T F R L E A V G G E N Q V D N - - V D E H V V K Q A V L Q A M R T C S S Q G C R Q Q Q E
 
0