fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G56220.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb021553 not found in 287aa AT2G40435.1 1st_not 0.428104575 II
Sb006945 not found in 170aa AT2G40435.1 not_not 0.424836601 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G56220.1     ---------MVSREHKR--GSS-------LREKFHLLRSITDSH----------------
Sb006945_Sorbi1 ----------MSWEQRKKAAAA-------LHEKLQILRSITHSR----------------
Sb021553_Sorbi1 ERLVGEKDDVVKGAQEAGGCSSGEAEDPPLHHSFPRFEQHIDNHGRVGVHQGAEAEGGEA
                          :.  :.    ::       *:..:  :..  ..:                

AT3G56220.1     ----------AESETSIIVDASKYIKKL-----KQKVEKINNATTSEQS------FRESS
Sb006945_Sorbi1 ----------ALSDASIIMDASEYIKEL-----KQKVVRLKQEMACEEAEAAGALLKHSS
Sb021553_Sorbi1 EPGDCLRARCAETQVVVLSDGDRGNPRSAGVVPRQRV--LRQELPGAARLRPGSLRRARA
                          * ::. :: *...   .      :*:*  :.:  .           :  :

AT3G56220.1     DPNPMVTVETL----EKGFMIKVMSRKNE---------------AGMLVCVLETFED---
Sb006945_Sorbi1 SPSPVVTVETLAGAGKHGFLINVLSDKSC---------------PGLLVSILEAFDE---
Sb021553_Sorbi1 QRPP-----------GHRLLRRLLPPRGCGRRERGGQRGRARREAGRPAGRQELLRERQR
                .  *            : :: .::. :.                .*  .   * : :   

AT3G56220.1     --LGLDVVEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDSHA-----
Sb006945_Sorbi1 --LGLSVLQATASCADTFRLEAVGGENQVDN--VDEHVVKQAVLQAMRTCSSQGCRQQQE
Sb021553_Sorbi1 AGRGVSRGQADERVSTHQASTCIGRTSSCPGPYVVVLRIHELSRDPLYASSSVPSL----
                   *:.  :*    :      .:*  ..  .  :    :::   :.: : *.  .
BoxShade v3.31 C (beta, 970507) Output
AT3G56220.1     - - - - - - - - - M V S R E H K R - - G S S - - - - - - - L R E K F H L L R S I T D S H - - - - - - - - - - - - - - - -
Sb006945_Sorbi1    - - - - - - - - - - M S W E Q R K K A A A A - - - - - - - L H E K L Q I L R S I T H S R - - - - - - - - - - - - - - - -
Sb021553_Sorbi1    E R L V G E K D D V V K G A Q E A G G C S S G E A E D P P L H H S F P R F E Q H I D N H G R V G V H Q G A E A E G G E A
 
AT3G56220.1     - - - - - - - - - - A E S E T S I I V D A S K Y I K K L - - - - - K Q K V E K I N N A T T S E Q S - - - - - - F R E S S
Sb006945_Sorbi1    - - - - - - - - - - A L S D A S I I M D A S E Y I K E L - - - - - K Q K V V R L K Q E M A C E E A E A A G A L L K H S S
Sb021553_Sorbi1    E P G D C L R A R C A E T Q V V V L S D G D R G N P R S A G V V P R Q R V - - L R Q E L P G A A R L R P G S L R R A R A
 
AT3G56220.1     D P N P M V T V E T L - - - - E K G F M I K V M S R K N E - - - - - - - - - - - - - - - A G M L V C V L E T F E D - - -
Sb006945_Sorbi1    S P S P V V T V E T L A G A G K H G F L I N V L S D K S C - - - - - - - - - - - - - - - P G L L V S I L E A F D E - - -
Sb021553_Sorbi1    Q R P P - - - - - - - - - - - G H R L L R R L L P P R G C G R R E R G G Q R G R A R R E A G R P A G R Q E L L R E R Q R
 
AT3G56220.1     - - L G L D V V E A R V S C T D T F S L H A I G S S N N D D G D C I D A E A V K Q A V A E A I R T W S D S H A - - - - -
Sb006945_Sorbi1    - - L G L S V L Q A T A S C A D T F R L E A V G G E N Q V D N - - V D E H V V K Q A V L Q A M R T C S S Q G C R Q Q Q E
Sb021553_Sorbi1    A G R G V S R G Q A D E R V S T H Q A S T C I G R T S S C P G P Y V V V L R I H E L S R D P L Y A S S S V P S L - - - -
 
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