fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G56850.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb018840 not found in 324aa AT3G56850.1 1st_1st 0.473021582 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G56850.1     MDSQR--------GIVEQAKSQSLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKS
Sb018840_Sorbi1 MSSQTGGGRGSDAGSVQRGQMQSLARQGSLYNLTLDEVQSHL---GEPLLSMNFDELLKS
                *.**         * *::.: *** **.***.*******.**   *:.* ***:******

AT3G56850.1     VCSVEANQPSSMAVNGGAAAQEGLSRQGSLTLPRDLSKKTVDEVWKDIQQNKNGGSA---
Sb018840_Sorbi1 VFP-DGVDPDG-AVSGKPDPTSSLQRQGSIMMPLQLSKKTVDEVWKGIQGGPETSAAVDG
                * . :. :*.. **.* . . ..*.****: :* :***********.** . : .:*   

AT3G56850.1     HERRDKQPTLGEMTLEDLLLKAGVVTETIPGSNHDGPVGGGSAGSGAGLGQNITQVGP--
Sb018840_Sorbi1 RQRRERQPTLGEMTLEDFLVKAGVVTE-------------GHMKDSADLQSNVDTVGSSV
                ::**::***********:*:*******             *   ..*.* .*:  **.  

AT3G56850.1     -------------WIQYH-------QLPSM----------PQP-----QAFMPYPVSDMQ
Sb018840_Sorbi1 VVAGASSLNPGAQWLQQYQQQALGSQQPSLAGSYMASQLHPQPLSIATGAIMDSIYSDGQ
                             *:* :       * **:          ***      *:*    ** *

AT3G56850.1     AMVSQSSLMGGLSDTQTPGRKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHE
Sb018840_Sorbi1 IT---SPSFGALSDPQTPGRKRGALGEVVDKVVERRQKRMIKNRESAARSRARKQAYTNE
                     *. :*.***.******* * ****:*.**************************:*

AT3G56850.1     LEIKVSRLEEENERLRKQKEVEKILPSVPPPDPKRQLRRTSSAPF
Sb018840_Sorbi1 LENKVSRLEEENERLKKQQELDEILSSAPPPEPKYQLRRTGSAAF
                ** ************:**:*:::**.*.***:** *****.**.*
BoxShade v3.31 C (beta, 970507) Output
AT3G56850.1     M D S Q R - - - - - - - - G I V E Q A K S Q S L N R Q S S L Y S L T L D E V Q N H L G S S G K A L G S M N L D E L L K S
Sb018840_Sorbi1    M S S Q T G G G R G S D A G S V Q R G Q M Q S L A R Q G S L Y N L T L D E V Q S H L - - - G E P L L S M N F D E L L K S
 
AT3G56850.1     V C S V E A N Q P S S M A V N G G A A A Q E G L S R Q G S L T L P R D L S K K T V D E V W K D I Q Q N K N G G S A - - -
Sb018840_Sorbi1    V F P - D G V D P D G - A V S G K P D P T S S L Q R Q G S I M M P L Q L S K K T V D E V W K G I Q G G P E T S A A V D G
 
AT3G56850.1     H E R R D K Q P T L G E M T L E D L L L K A G V V T E T I P G S N H D G P V G G G S A G S G A G L G Q N I T Q V G P - -
Sb018840_Sorbi1    R Q R R E R Q P T L G E M T L E D F L V K A G V V T E - - - - - - - - - - - - - G H M K D S A D L Q S N V D T V G S S V
 
AT3G56850.1     - - - - - - - - - - - - - W I Q Y H - - - - - - - Q L P S M - - - - - - - - - - P Q P - - - - - Q A F M P Y P V S D M Q
Sb018840_Sorbi1    V V A G A S S L N P G A Q W L Q Q Y Q Q Q A L G S Q Q P S L A G S Y M A S Q L H P Q P L S I A T G A I M D S I Y S D G Q
 
AT3G56850.1     A M V S Q S S L M G G L S D T Q T P G R K R V A S G E V V E K T V E R R Q K R M I K N R E S A A R S R A R K Q A Y T H E
Sb018840_Sorbi1    I T - - - S P S F G A L S D P Q T P G R K R G A L G E V V D K V V E R R Q K R M I K N R E S A A R S R A R K Q A Y T N E
 
AT3G56850.1     L E I K V S R L E E E N E R L R K Q K E V E K I L P S V P P P D P K R Q L R R T S S A P F
Sb018840_Sorbi1    L E N K V S R L E E E N E R L K K Q Q E L D E I L S S A P P P E P K Y Q L R R T G S A A F
 
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