fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G58070.1 VQDHVSLDLHL at 247/253 in AT3G58070.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052163 SSVNDHLSLDLHL in 228/235 AT3G58070.1 1st_1st 0.316008316 Ib
Pt007625 AQDHVSLDLHL in 210/215 AT3G58070.1 1st_1st 0.336798336 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G58070.1     MDEATGETETQDFMNVESFSQLPFIRRPKDKNPKPIRVFGKDF----TGRDFSITTGQED
pt007625_POPTR_ MDK--VERETHDFMNVESFSQLPFIRPA-PVKEKGIRLFGIEF-----------GSNND-
gm052163_Glyma1 MDN-TTERETHDFMNVHSFSQLPFLRPAPPSKDKAIRLFGHEFIDAPTSNTFMISNNNV-
                **:   * **:*****.*******:* .   : * **:** :*            ..:  

AT3G58070.1     YTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRE
pt007625_POPTR_ ------SPAADESESAETNEDTVKESESSDNNRRFECHYCCRNFPTSQALGGHQNAHKRE
gm052163_Glyma1 ------SPSQHNNTNKDVNNNNV-ENNGAESSRRFECHYCCRNFPTSQALGGHQNAHKRE
                      :   .:. . : . :.  :.:. . .******** *******************

AT3G58070.1     RQLAKR-GVSSYFYHPDNNPYSYRHYPSWTNGPLTAARSYGGFSSGPKPSGYYTRPSYGS
pt007625_POPTR_ RQHAKRAHLQ-----IDSTPSSAMTYPSWNSHSNT-SRFYGSHGSYSQ------QPINGS
gm052163_Glyma1 RQHAKR-HLQSTL-ISDANAYSFMNYSSNSSSAMI-GRFYGNSYSHQQ-----LQPINGS
                ** ***  :.      * .. *   *.* .. .   .* **.  *  :      :*  **

AT3G58070.1     QLGLWRLPPRVQGVYNSNAAFTSNGSSSSSN------STLPLLTRSQTQLSSQVGGSAAQ
pt007625_POPTR_ PLGLWRIPAV-------HGGGTFHHSDRSMH------HPLPLFAGEELKPSPAGTGSSSQ
gm052163_Glyma1 PLGSWRIPT---------AATTAHAQSNPIFNRECSLHPLPLFSGEEMVNARMGF-SGSQ
                 ** **:*.         .. * : .. .         .***:: .:   :     *.:*

AT3G58070.1     NRMSSYG-YGLSPNVQDHVSLDLHL
pt007625_POPTR_ GR---YG-YDSKPSAQDHVSLDLHL
gm052163_Glyma1 NR---FGNYDPKSSVNDHLSLDLHL
                .*   :* *. ....:**:******
BoxShade v3.31 C (beta, 970507) Output
AT3G58070.1     M D E A T G E T E T Q D F M N V E S F S Q L P F I R R P K D K N P K P I R V F G K D F - - - - T G R D F S I T T G Q E D
pt007625_POPTR_    M D K - - V E R E T H D F M N V E S F S Q L P F I R P A - P V K E K G I R L F G I E F - - - - - - - - - - - G S N N D -
gm052163_Glyma1    M D N - T T E R E T H D F M N V H S F S Q L P F L R P A P P S K D K A I R L F G H E F I D A P T S N T F M I S N N N V -
 
AT3G58070.1     Y T D P Y Q T K N K E E E E E E D Q T G D N S T D N N S I S H N R R F E C H Y C F R N F P T S Q A L G G H Q N A H K R E
pt007625_POPTR_    - - - - - - S P A A D E S E S A E T N E D T V K E S E S S D N N R R F E C H Y C C R N F P T S Q A L G G H Q N A H K R E
gm052163_Glyma1    - - - - - - S P S Q H N N T N K D V N N N N V - E N N G A E S S R R F E C H Y C C R N F P T S Q A L G G H Q N A H K R E
 
AT3G58070.1     R Q L A K R - G V S S Y F Y H P D N N P Y S Y R H Y P S W T N G P L T A A R S Y G G F S S G P K P S G Y Y T R P S Y G S
pt007625_POPTR_    R Q H A K R A H L Q - - - - - I D S T P S S A M T Y P S W N S H S N T - S R F Y G S H G S Y S Q - - - - - - Q P I N G S
gm052163_Glyma1    R Q H A K R - H L Q S T L - I S D A N A Y S F M N Y S S N S S S A M I - G R F Y G N S Y S H Q Q - - - - - L Q P I N G S
 
AT3G58070.1     Q L G L W R L P P R V Q G V Y N S N A A F T S N G S S S S S N - - - - - - S T L P L L T R S Q T Q L S S Q V G G S A A Q
pt007625_POPTR_    P L G L W R I P A V - - - - - - - H G G G T F H H S D R S M H - - - - - - H P L P L F A G E E L K P S P A G T G S S S Q
gm052163_Glyma1    P L G S W R I P T - - - - - - - - - A A T T A H A Q S N P I F N R E C S L H P L P L F S G E E M V N A R M G F - S G S Q
 
AT3G58070.1     N R M S S Y G - Y G L S P N V Q D H V S L D L H L
pt007625_POPTR_    G R - - - Y G - Y D S K P S A Q D H V S L D L H L
gm052163_Glyma1    N R - - - F G N Y D P K S S V N D H L S L D L H L
 
0