fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G58070.1 VQDHVSLDLHL at 247/253 in AT3G58070.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052163 SSVNDHLSLDLHL in 228/235 AT3G58070.1 1st_1st 0.316008316 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G58070.1     MDEATGETETQDFMNVESFSQLPFIRRPKDKNPKPIRVFGKDF----TGRDFSITTGQED
gm052163_Glyma1 MDNTT-ERETHDFMNVHSFSQLPFLRPAPPSKDKAIRLFGHEFIDAPTSNTFMISNNN--
                **::* * **:*****.*******:* .  .: *.**:**::*    *.. * *:..:  

AT3G58070.1     YTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRE
gm052163_Glyma1 -VSPSQHNNTNKD-----VNNNNVENNGAESSRRFECHYCCRNFPTSQALGGHQNAHKRE
                 ..* * :*.:::     ..:*..:**. . .******** *******************

AT3G58070.1     RQLAKRGVSSYFYHPDNNPYSYRHYPSWTNGPLTAARSYGGFSSGPKPSGYYTRPSYGSQ
gm052163_Glyma1 RQHAKRHLQSTLI-SDANAYSFMNYSSNSSSAMI-GRFYGNSYSHQQ-----LQPINGSP
                ** *** :.* :  .* *.**: :*.* :...:  .* **.  *  :      :*  ** 

AT3G58070.1     LGLWRLPPRVQGVYNSNAAFTSNGSSSS------SNSTLPLLTRSQTQLSSQVGGSAAQN
gm052163_Glyma1 LGSWRIP---------TAATTAHAQSNPIFNRECSLHPLPLFS-GEEMVNARMGFSGSQN
                ** **:*         .** *::..*..      *  .***:: .:  :.:::* *.:**

AT3G58070.1     RMSSYGYGLSP--NVQDHVSLDLHL
gm052163_Glyma1 RFGNY----DPKSSVNDHLSLDLHL
                *:..*    .*  .*:**:******
BoxShade v3.31 C (beta, 970507) Output
AT3G58070.1     M D E A T G E T E T Q D F M N V E S F S Q L P F I R R P K D K N P K P I R V F G K D F - - - - T G R D F S I T T G Q E D
gm052163_Glyma1    M D N T T - E R E T H D F M N V H S F S Q L P F L R P A P P S K D K A I R L F G H E F I D A P T S N T F M I S N N N - -
 
AT3G58070.1     Y T D P Y Q T K N K E E E E E E D Q T G D N S T D N N S I S H N R R F E C H Y C F R N F P T S Q A L G G H Q N A H K R E
gm052163_Glyma1    - V S P S Q H N N T N K D - - - - - V N N N N V E N N G A E S S R R F E C H Y C C R N F P T S Q A L G G H Q N A H K R E
 
AT3G58070.1     R Q L A K R G V S S Y F Y H P D N N P Y S Y R H Y P S W T N G P L T A A R S Y G G F S S G P K P S G Y Y T R P S Y G S Q
gm052163_Glyma1    R Q H A K R H L Q S T L I - S D A N A Y S F M N Y S S N S S S A M I - G R F Y G N S Y S H Q Q - - - - - L Q P I N G S P
 
AT3G58070.1     L G L W R L P P R V Q G V Y N S N A A F T S N G S S S S - - - - - - S N S T L P L L T R S Q T Q L S S Q V G G S A A Q N
gm052163_Glyma1    L G S W R I P - - - - - - - - - T A A T T A H A Q S N P I F N R E C S L H P L P L F S - G E E M V N A R M G F S G S Q N
 
AT3G58070.1     R M S S Y G Y G L S P - - N V Q D H V S L D L H L
gm052163_Glyma1    R F G N Y - - - - D P K S S V N D H L S L D L H L
 
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