fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G60530.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt039151 not found in 246aa AT3G60530.1 1st_1st 0.537084398 Ia
Pt017520 not found in 251aa AT2G45050.1 not_not 0.526854219 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G60530.1     MDVYG----MSSPDLLRIDDLLDFSNDEIFSSSST-------VTSSAASSAASSENPFSF
pt039151_POPTR_ MDVYGGVS-TSAPDYFLIDDLLDFSNDDLLTSSTD----HHHLPPPETSSIHHHHH--FF
pt017520_POPTR_ MDVYGGLSTTTAPDYFHIDDLLDFSNDDLLSSPSSSIDHHHHLPPPETSSIHHHH----F
                *****     ::** : **********::::*.:        :... :**    .    *

AT3G60530.1     PS-STY--TSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMTVRPEISF
pt039151_POPTR_ PSPTTYINNTSSLSTDFTDHLSVPSDDVAELEWLSQFMEDSFTDFPS---TINIPTDTSS
pt017520_POPTR_ PS-STYINNPSSLSTDFTDHLSVPTDDVAELEWLSQFVEDSFSDFPS---IINIPTDTSF
                ** :**  ...:* ****..*.**:**.*.*****:*::***:***:    :.: .: * 

AT3G60530.1     TGKPRSRRSRAPAPSVAGTWAPMSESELCHSV-AKPKPKKVYN-AESVTAD---GARRCT
pt039151_POPTR_ RIKSCSKRSR------TTTTATSSSADIETAVTGESRVKKENNGAPHSSAETEGGARRCT
pt017520_POPTR_ CNKSRSKRSRA-----TATTATSSSPELETAVTGKSRLKKENNGAPHSPAE-EGTVRRCT
                  *. *:***      : * *. *..::  :* .:.: **  * *   .*:    .****

AT3G60530.1     HCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMEL
pt039151_POPTR_ HCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVLEL
pt017520_POPTR_ HCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTRHSNSHRKVLEL
                ****************************************:*******:********:**

AT3G60530.1     RRQKE------QQ---------ESCVRIPPFQPQ
pt039151_POPTR_ RRQKEMML---RQQQQHGYQGYEVC---------
pt017520_POPTR_ RRQKEMTVGRQQQQQQHGYQGYEVC---------
                *****      :*         * *
BoxShade v3.31 C (beta, 970507) Output
AT3G60530.1     M D V Y G - - - - M S S P D L L R I D D L L D F S N D E I F S S S S T - - - - - - - V T S S A A S S A A S S E N P F S F
pt039151_POPTR_    M D V Y G G V S - T S A P D Y F L I D D L L D F S N D D L L T S S T D - - - - H H H L P P P E T S S I H H H H H - - F F
pt017520_POPTR_    M D V Y G G L S T T T A P D Y F H I D D L L D F S N D D L L S S P S S S I D H H H H L P P P E T S S I H H H H - - - - F
 
AT3G60530.1     P S - S T Y - - T S P T L L T D F T H D L C V P S D D A A H L E W L S R F V D D S F S D F P A N P L T M T V R P E I S F
pt039151_POPTR_    P S P T T Y I N N T S S L S T D F T D H L S V P S D D V A E L E W L S Q F M E D S F T D F P S - - - T I N I P T D T S S
pt017520_POPTR_    P S - S T Y I N N P S S L S T D F T D H L S V P T D D V A E L E W L S Q F V E D S F S D F P S - - - I I N I P T D T S F
 
AT3G60530.1     T G K P R S R R S R A P A P S V A G T W A P M S E S E L C H S V - A K P K P K K V Y N - A E S V T A D - - - G A R R C T
pt039151_POPTR_    R I K S C S K R S R - - - - - - T T T T A T S S S A D I E T A V T G E S R V K K E N N G A P H S S A E T E G G A R R C T
pt017520_POPTR_    C N K S R S K R S R A - - - - - T A T T A T S S S P E L E T A V T G K S R L K K E N N G A P H S P A E - E G T V R R C T
 
AT3G60530.1     H C A S E K T P Q W R T G P L G P K T L C N A C G V R Y K S G R L V P E Y R P A S S P T F V L T Q H S N S H R K V M E L
pt039151_POPTR_    H C A S E K T P Q W R T G P L G P K T L C N A C G V R Y K S G R L V P E Y R P A A S P T F V L T Q H S N S H R K V L E L
pt017520_POPTR_    H C A S E K T P Q W R T G P L G P K T L C N A C G V R Y K S G R L V P E Y R P A A S P T F V L T R H S N S H R K V L E L
 
AT3G60530.1     R R Q K E - - - - - - Q Q - - - - - - - - - E S C V R I P P F Q P Q
pt039151_POPTR_    R R Q K E M M L - - - R Q Q Q Q H G Y Q G Y E V C - - - - - - - - -
pt017520_POPTR_    R R Q K E M T V G R Q Q Q Q Q Q H G Y Q G Y E V C - - - - - - - - -
 
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