fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm002637 DHLRTDLRLGLSISTT in 40/180 AT3G62100.1 not_1st 0.432142857 II
Pt039254 RDLSTDLRLGLGISTS in 37/174 AT3G62100.1 not_1st 0.464285714 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G62100.1     MGRGRSSSSSSIESSCKSNPFGVSSSNT-----RN---LSTDLRLGLSFGSSSGQYYNGG
gm002637_Glyma0 MGK-ASSSSSSSISSCR-NPSNYSTASSLTHQHSDQDHLRTDLRLGLSISTT-------H
pt039254_POPTR_ MGRGAASSSSSSFESSR-YPS-VSGESSFPHVKRD---LSTDLRLGLGISTSR------Q
                **:  :*****  .*.:  *   *  .:      :   * *******.:.::        

AT3G62100.1     DNHEYDGVGAAEEMMI-----------MEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLL
gm002637_Glyma0 DQH----VGSSSSGGHWQPMQPHLSSFSQATEVNHCSDHTSFFVKVYMEGIPIGRKLNLL
pt039254_POPTR_ DNP----STPSEQLLDWPPIKPSPGK-AVTSEENECCSST-LFVKVYMEGIQIGRKLNLL
                *:       .:..                  * *.* .   ::*** ***: ****::**

AT3G62100.1     SLNGYHDLITTLDYMFNASILW-AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSS
gm002637_Glyma0 AHDGYHELVKTLEQMFDTTILWGTEMDGVQPDRCHVLTYEDGEGDLIMVGDVPWEMFLSA
pt039254_POPTR_ AHDGYHDLIQTLDEMFNTSILW-PEMDVEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPS
                : :***:*: **: **:::*** .* :   . :.***** * *** ::*******:**.:

AT3G62100.1     VRRLKISRAYHY-
gm002637_Glyma0 VKRLKITRVETFG
pt039254_POPTR_ VRRLKITRADSL-
                *:****:*.
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G R S S S S S S I E S S C K S N P F G V S S S N T - - - - - R N - - - L S T D L R L G L S F G S S S G Q Y Y N G G
gm002637_Glyma0    M G K - A S S S S S S S I S S C R - N P S N Y S T A S S L T H Q H S D Q D H L R T D L R L G L S I S T T - - - - - - - H
pt039254_POPTR_    M G R G A A S S S S S S F E S S R - Y P S - V S G E S S F P H V K R D - - - L S T D L R L G L G I S T S R - - - - - - Q
 
AT3G62100.1     D N H E Y D G V G A A E E M M I - - - - - - - - - - - M E E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L
gm002637_Glyma0    D Q H - - - - V G S S S S G G H W Q P M Q P H L S S F S Q A T E V N H C S D H T S F F V K V Y M E G I P I G R K L N L L
pt039254_POPTR_    D N P - - - - S T P S E Q L L D W P P I K P S P G K - A V T S E E N E C C S S T - L F V K V Y M E G I Q I G R K L N L L
 
AT3G62100.1     S L N G Y H D L I T T L D Y M F N A S I L W - A E E E D M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S
gm002637_Glyma0    A H D G Y H E L V K T L E Q M F D T T I L W G T E M D G V Q P D R C H V L T Y E D G E G D L I M V G D V P W E M F L S A
pt039254_POPTR_    A H D G Y H D L I Q T L D E M F N T S I L W - P E M D V E H S G K C H V L T Y E D K E G D W L I V G D V P W E V F L P S
 
AT3G62100.1     V R R L K I S R A Y H Y -
gm002637_Glyma0    V K R L K I T R V E T F G
pt039254_POPTR_    V R R L K I T R A D S L -
 
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