fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm007900 QQLPTDLRLGLGISAT in 35/180 AT2G46990.1 not_not 0.421428571 III
Gm052949 QELPTDLRLGLGISAT in 35/177 AT2G46990.1 not_not 0.421428571 III
Gm045965 TDLSTDLRLGLSISPS in 119/260 AT3G17600.1 not_not 0.403571428 III
Gm035692 TDLSTDLRLGLSISPS in 103/244 AT3G17600.1 not_not 0.4 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G62100.1     ------------------------------------------------------------
gm052949_Glyma1 ------------------------------------------------------------
gm035692_Glyma1 MSDLAL----------------LLLIILSLSFFLFWYKVASVVYIYKDPKVAVFLFSLDQ
gm007900_Glyma0 ------------------------------------------------------------
gm045965_Glyma1 MSPTLMANQNQRECAECLTWLCFLLITLSLSFFLFCFKVASVVCIYKEPKVAAFLFSLDQ
                                                                            

AT3G62100.1     ------MG----------RGRSSSSSSIESS-----CKSNPF-GVSSSNTRN---LSTDL
gm052949_Glyma1 ------MG----------KPASSSSSSISST-----TNRHLLLSTASSLTQE---LPTDL
gm035692_Glyma1 FHSLEDMGTLEQIDAPQTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDL
gm007900_Glyma0 ------MG----------KPASSSSSSISST-----TNRRLLISTASSLTQQ---LPTDL
gm045965_Glyma1 FHSLEDMGTLEQIDAPQTQSSSSSSSSIDSNNNPSRTRTPPSSSPSSSLCRNRTDLSTDL
                      **          :  *******.*.      .     . :**  ::   *.***

AT3G62100.1     RLGLSFGS--------SSGQYYNGGD---NHEYDGVGAAEEMMIMEEEEQNEC-NSVGSF
gm052949_Glyma1 RLGLGISATQHFASSISRGQWQQSHHPFV-NIYSQ--VPAEV--------NDCSNDHSSF
gm035692_Glyma1 RLGLSISP-----SSQSELPFNSTPR---EESFDWPPIKSILRSTLVGKQSHL-SQRPSL
gm007900_Glyma0 RLGLGISATQHVASSISRGQWQQPHHPFVNNNYSQAAASAEV--------NDCSNDHSSF
gm045965_Glyma1 RLGLSISP-----SSQSESPFNSTRR---EESFDWPPIKSILRSTLVGKQSYL-SQRPSL
                ****.:..        *   : .       . :.       :        .   ..  *:

AT3G62100.1     YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEED-MCSEKSHVLTYADK
gm052949_Glyma1 FVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDE
gm035692_Glyma1 FVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTNILCPNSQP-LNSRNFHVLTYEDQ
gm007900_Glyma0 FVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDE
gm045965_Glyma1 FVKVYMEGIPIGRKLNLMAHYGYDGLVKTLGHMFRTNILCPNSQP-LNSGNFHVLTYEDQ
                :*** ***:*****:::::  .*  *: ** :** :.**   .   : . . ***** *:

AT3G62100.1     EGDWMMVGDVPWEMFLSSVRRLKISRAYHY--
gm052949_Glyma1 EGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC
gm035692_Glyma1 EGDWMMVGDVPWEMFLNSVKRLKITRADRC--
gm007900_Glyma0 EGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC
gm045965_Glyma1 EGDWMMVGDVPWEMFLNSVKRLKITRADRC--
                *** :***********.:*:****:*.
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm052949_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm035692_Glyma1    M S D L A L - - - - - - - - - - - - - - - - L L L I I L S L S F F L F W Y K V A S V V Y I Y K D P K V A V F L F S L D Q
gm007900_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm045965_Glyma1    M S P T L M A N Q N Q R E C A E C L T W L C F L L I T L S L S F F L F C F K V A S V V C I Y K E P K V A A F L F S L D Q
 
AT3G62100.1     - - - - - - M G - - - - - - - - - - R G R S S S S S S I E S S - - - - - C K S N P F - G V S S S N T R N - - - L S T D L
gm052949_Glyma1    - - - - - - M G - - - - - - - - - - K P A S S S S S S I S S T - - - - - T N R H L L L S T A S S L T Q E - - - L P T D L
gm035692_Glyma1    F H S L E D M G T L E Q I D A P Q T R S S S S S S S S I D S N N H P S R T R T P P P S S P S S S A C R N R T D L S T D L
gm007900_Glyma0    - - - - - - M G - - - - - - - - - - K P A S S S S S S I S S T - - - - - T N R R L L I S T A S S L T Q Q - - - L P T D L
gm045965_Glyma1    F H S L E D M G T L E Q I D A P Q T Q S S S S S S S S I D S N N N P S R T R T P P S S S P S S S L C R N R T D L S T D L
 
AT3G62100.1     R L G L S F G S - - - - - - - - S S G Q Y Y N G G D - - - N H E Y D G V G A A E E M M I M E E E E Q N E C - N S V G S F
gm052949_Glyma1    R L G L G I S A T Q H F A S S I S R G Q W Q Q S H H P F V - N I Y S Q - - V P A E V - - - - - - - - N D C S N D H S S F
gm035692_Glyma1    R L G L S I S P - - - - - S S Q S E L P F N S T P R - - - E E S F D W P P I K S I L R S T L V G K Q S H L - S Q R P S L
gm007900_Glyma0    R L G L G I S A T Q H V A S S I S R G Q W Q Q P H H P F V N N N Y S Q A A A S A E V - - - - - - - - N D C S N D H S S F
gm045965_Glyma1    R L G L S I S P - - - - - S S Q S E S P F N S T R R - - - E E S F D W P P I K S I L R S T L V G K Q S Y L - S Q R P S L
 
AT3G62100.1     Y V K V N M E G V P I G R K I D L L S L N G Y H D L I T T L D Y M F N A S I L W A E E E D - M C S E K S H V L T Y A D K
gm052949_Glyma1    F V K V Y M E G I P I G R K L N I L A H G G Y Y E L V R T L E H M F D T T I L W G T E M N G V Q P E R C H V L T Y E D E
gm035692_Glyma1    F V K V Y M E G I P I G R K L N L M A H Y S Y D G L V K T L G H M F R T N I L C P N S Q P - L N S R N F H V L T Y E D Q
gm007900_Glyma0    F V K V Y M E G I P I G R K L N I L A H G G Y Y E L V R T L E H M F D T T I L W G T E M N G V Q P E R C H V L T Y E D E
gm045965_Glyma1    F V K V Y M E G I P I G R K L N L M A H Y G Y D G L V K T L G H M F R T N I L C P N S Q P - L N S G N F H V L T Y E D Q
 
AT3G62100.1     E G D W M M V G D V P W E M F L S S V R R L K I S R A Y H Y - -
gm052949_Glyma1    E G D L V M V G D V P W E M F L S T V K R L K I T R V D T F G C
gm035692_Glyma1    E G D W M M V G D V P W E M F L N S V K R L K I T R A D R C - -
gm007900_Glyma0    E G D L V M V G D V P W E M F L S T V K R L K I T R V D T F G C
gm045965_Glyma1    E G D W M M V G D V P W E M F L N S V K R L K I T R A D R C - -
 
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