fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027578 not found in 115aa AT3G62100.1 1st_1st 0.439285714 Ia
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_1st 0.489285714 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G62100.1     MGRG-RSSSSSSIESSCKSNPFGVS-SSNTR---NLSTDLRLGLSFGSSSGQYYNGGDNH
gm027578_Glyma1 ------------------MQPHLI--SSFSQ-----------------------------
pt016750_POPTR_ MGRGATSSSSSSFES--SNYPSVSSKSSLSQLKKDLSTDLRLGLSISTSQQENPSTPSDQ
                                    *     ** ::                             

AT3G62100.1     EYDGVGAAEEMMIME-EEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLD
gm027578_Glyma1 ----------------ATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLE
pt016750_POPTR_ QLSDWPPIKPFLRKALASEENECSSAT-FFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLD
                                  * *:*..   *:*** ***:*****::**: :***:*: **:

AT3G62100.1     YMFNASILW-AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRAYHY-
gm027578_Glyma1 QMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVEAFG
pt016750_POPTR_ QMFNTSILW-PEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRADSL-
                 **:::*** .* :   . :.***** * *** ::**********.:*:****:*.
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G - R S S S S S S I E S S C K S N P F G V S - S S N T R - - - N L S T D L R L G L S F G S S S G Q Y Y N G G D N H
gm027578_Glyma1    - - - - - - - - - - - - - - - - - - M Q P H L I - - S S F S Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt016750_POPTR_    M G R G A T S S S S S S F E S - - S N Y P S V S S K S S L S Q L K K D L S T D L R L G L S I S T S Q Q E N P S T P S D Q
 
AT3G62100.1     E Y D G V G A A E E M M I M E - E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L N G Y H D L I T T L D
gm027578_Glyma1    - - - - - - - - - - - - - - - - A T E V N D C S D H T S F F V K V Y M E G I P I G R K L N L L A H D G Y H E L V K T L E
pt016750_POPTR_    Q L S D W P P I K P F L R K A L A S E E N E C S S A T - F F V K V Y M E G I P I G R K L N L L A H D G Y H D L I Q T L D
 
AT3G62100.1     Y M F N A S I L W - A E E E D M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R R L K I S R A Y H Y -
gm027578_Glyma1    Q M F D T T I L W G T E M D G V Q P E R C H V L T Y E D G E G D L I M V G D V P W E M F L S A V K R L K I T R V E A F G
pt016750_POPTR_    Q M F N T S I L W - P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R L K I T R A D S L -
 
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