fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt039254 RDLSTDLRLGLGISTS in 37/174 AT3G62100.1 not_1st 0.464285714 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G62100.1     MGRG-RSSSSSSIESSCKSNPFGVSS--SNTRNLSTDLRLGLSFGSSSGQYYNGGDNHEY
pt039254_POPTR_ MGRGAASSSSSSFESSRYPSVSGESSFPHVKRDLSTDLRLGLGISTS-----------RQ
                ****  ******:***  ..  * **    .*:*********.:.:*           . 

AT3G62100.1     DGVGAAEEMMI-----------MEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGY
pt039254_POPTR_ DNPSTPSEQLLDWPPIKPSPGKAVTSEENECCS-STLFVKVYMEGIQIGRKLNLLAHDGY
                *. .:..* ::              .*:*** * .:::*** ***: ****::**: :**

AT3G62100.1     HDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKI
pt039254_POPTR_ HDLIQTLDEMFNTSILWPEMDVEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPSVRRLKI
                **** *** ***:****.* :   * *.***** ******::*******:**.*******

AT3G62100.1     SRAYHY
pt039254_POPTR_ TRADSL
                :**
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G - R S S S S S S I E S S C K S N P F G V S S - - S N T R N L S T D L R L G L S F G S S S G Q Y Y N G G D N H E Y
pt039254_POPTR_    M G R G A A S S S S S S F E S S R Y P S V S G E S S F P H V K R D L S T D L R L G L G I S T S - - - - - - - - - - - R Q
 
AT3G62100.1     D G V G A A E E M M I - - - - - - - - - - - M E E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L N G Y
pt039254_POPTR_    D N P S T P S E Q L L D W P P I K P S P G K A V T S E E N E C C S - S T L F V K V Y M E G I Q I G R K L N L L A H D G Y
 
AT3G62100.1     H D L I T T L D Y M F N A S I L W A E E E D M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R R L K I
pt039254_POPTR_    H D L I Q T L D E M F N T S I L W P E M D V E H S G K C H V L T Y E D K E G D W L I V G D V P W E V F L P S V R R L K I
 
AT3G62100.1     S R A Y H Y
pt039254_POPTR_    T R A D S L
 
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